3LHD

crystal structure of p. abyssi trna m1a58 methyltransferase in complex with s-adenosyl-l-homocysteine

• Total interactions analyzed: 6
• Total true interactions: 6
• Strongest Interaction:
  • Chains: C-D
  • Int. Res.: 228
  • Norm. En. per Res.: -3.6238
• Hub Node: C(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
C-A	-97.2097	7.6077	1131.63	1042.028	71	21	5	8308	1	10	12
C-B	0.0	0.0	-13.9373	-13.9373	25	2	0	657	0	0	2
C-D	-141.0836	-138.5501	-546.591	-826.2247	228	28	23	24717	20	66	101
A-B	-131.1609	-138.0859	-546.849	-816.0958	228	31	24	24802	17	69	101
A-D	0.0	0.0	-13.7278	-13.7278	23	2	0	653	0	0	2
B-D	-98.3984	7.241	1085.17	994.0127	74	21	5	8367	1	10	12

Interface residues

• C-A: ALA240A, ALA240C, ARG202A, ARG202C, ARG235A, ARG235C, ARG237A, ARG237C, ASN198A, ASN198C, ASN221A, ASN221C, ASP226A, ASP226C, CYS196A, CYS196C, CYS233A, CYS233C, GLN199A, GLN199C, GLN227A, GLN227C, GLN75C, GLU228A, GLU228C, GLU232A, GLU232C, GLY245A, GLY245C, HIS243A, HIS243C, HIS78A, HIS78C, LEU223A, LEU223C, LEU241A, LEU241C, LYS230A, LYS230C, LYS231A, LYS231C, MET201A, MET201C, MET234A, MET234C, PHE225A, PHE225C, PRO195A, PRO195C, PRO236A, PRO236C, SER197A, SER197C, THR194A, THR194C, THR238A, THR238C, THR239A, THR239C, THR244A, THR244C, TYR246A, TYR246C, VAL200A, VAL200C, VAL224A, VAL224C, VAL229A, VAL229C, VAL242A, VAL242C
• C-B: ARG202B, ARG202C, ARG235C, ASN198B, ASN198C, ASN221B, CYS196C, GLN227B, GLN227C, LEU223B, LEU223C, MET201B, MET201C, MET234B, MET234C, PHE225B, PHE225C, PRO236B, PRO236C, SER197B, SER197C, TYR246B, TYR246C, VAL200C, VAL242C
• C-D: ALA112C, ALA112D, ALA47C, ALA47D, ALA82C, ALA82D, ALA83C, ALA83D, ALA87C, ALA87D, ALA89C, ALA89D, ARG146C, ARG146D, ARG14C, ARG14D, ARG17C, ARG17D, ARG202C, ARG202D, ARG208C, ARG208D, ARG218C, ARG218D, ARG235C, ARG235D, ARG237C, ARG237D, ARG251C, ARG251D, ARG252C, ARG252D, ARG60C, ARG60D, ARG62C, ARG62D, ASN113C, ASN113D, ASN162C, ASN198C, ASN198D, ASN221C, ASN221D, ASN43C, ASN43D, ASP12C, ASP12D, ASP164C, ASP164D, ASP212C, ASP212D, ASP226C, ASP226D, ASP65C, ASP65D, ASP68C, ASP68D, ASP81C, ASP81D, ASP95C, ASP95D, CYS196C, CYS196D, CYS233C, CYS233D, GLN199C, GLN199D, GLN227C, GLN227D, GLU118C, GLU118D, GLU205C, GLU205D, GLU228C, GLU228D, GLU232C, GLU232D, GLU46C, GLU46D, GLY116C, GLY116D, GLY119C, GLY119D, GLY15C, GLY15D, GLY187C, GLY187D, GLY188C, GLY188D, GLY45C, GLY45D, GLY90C, GLY90D, GLY94C, GLY94D, HIS165C, HIS165D, HIS204C, HIS204D, HIS243C, HIS243D, HIS78C, HIS78D, ILE114C, ILE114D, ILE220C, ILE220D, ILE247C, ILE247D, ILE253C, ILE253D, ILE58C, ILE58D, ILE63C, ILE63D, ILE85C, ILE85D, ILE91C, ILE91D, ILE97C, ILE97D, LEU111C, LEU111D, LEU19C, LEU19D, LEU203C, LEU203D, LEU207C, LEU207D, LEU223C, LEU223D, LEU241C, LEU59C, LEU59D, LEU67C, LEU67D, LEU84C, LEU84D, LYS16C, LYS16D, LYS185C, LYS185D, LYS216C, LYS216D, LYS230C, LYS230D, LYS231C, LYS231D, LYS57C, LYS57D, LYS69C, LYS80C, LYS80D, MET1C, MET201C, MET201D, MET215C, MET215D, MET234C, MET234D, PHE110C, PHE110D, PHE143C, PHE143D, PHE189C, PHE189D, PHE225C, PHE225D, PHE249C, PHE249D, PHE44C, PHE44D, PHE96C, PHE96D, PRO117C, PRO117D, PRO13C, PRO13D, PRO186C, PRO186D, PRO217C, PRO217D, PRO236C, PRO236D, PRO61C, PRO61D, PRO79C, PRO79D, PRO93C, PRO93D, SER197C, SER197D, SER92C, SER92D, THR194C, THR194D, THR219C, THR219D, THR248C, THR248D, TYR246C, TYR246D, TYR66C, TYR66D, TYR88C, TYR88D, VAL115C, VAL115D, VAL11C, VAL11D, VAL163C, VAL163D, VAL200C, VAL200D, VAL222C, VAL222D, VAL224C, VAL224D, VAL229C, VAL229D, VAL242C, VAL242D, VAL64C, VAL64D, VAL86C, VAL86D, VAL9C, VAL9D
• A-B: ALA112A, ALA112B, ALA47A, ALA82A, ALA82B, ALA83A, ALA83B, ALA87A, ALA87B, ALA89A, ALA89B, ARG146A, ARG146B, ARG14A, ARG14B, ARG17A, ARG17B, ARG202A, ARG202B, ARG208A, ARG208B, ARG218A, ARG218B, ARG235A, ARG235B, ARG237A, ARG237B, ARG251A, ARG251B, ARG252A, ARG252B, ARG60A, ARG60B, ARG62A, ARG62B, ASN113A, ASN113B, ASN162A, ASN162B, ASN198A, ASN198B, ASN221A, ASN221B, ASN43A, ASN43B, ASP12A, ASP12B, ASP164A, ASP164B, ASP212A, ASP212B, ASP226A, ASP226B, ASP65A, ASP65B, ASP68A, ASP68B, ASP81A, ASP81B, ASP95A, ASP95B, CYS196A, CYS196B, CYS233A, CYS233B, GLN199A, GLN199B, GLN227A, GLN227B, GLU118A, GLU118B, GLU205A, GLU205B, GLU228A, GLU228B, GLU232A, GLU232B, GLU46A, GLU46B, GLY116A, GLY116B, GLY119A, GLY119B, GLY15A, GLY15B, GLY187A, GLY187B, GLY188A, GLY188B, GLY45A, GLY45B, GLY90A, GLY90B, GLY94A, GLY94B, HIS165A, HIS165B, HIS204A, HIS204B, HIS243A, HIS243B, HIS78A, HIS78B, ILE114A, ILE114B, ILE220A, ILE220B, ILE247A, ILE247B, ILE253A, ILE253B, ILE58A, ILE58B, ILE63A, ILE63B, ILE85A, ILE85B, ILE91A, ILE91B, ILE97A, ILE97B, LEU111A, LEU111B, LEU19A, LEU19B, LEU203A, LEU203B, LEU207B, LEU223A, LEU223B, LEU241A, LEU241B, LEU59A, LEU59B, LEU67A, LEU67B, LEU84A, LEU84B, LYS16A, LYS16B, LYS185A, LYS185B, LYS216A, LYS216B, LYS230A, LYS230B, LYS231A, LYS231B, LYS57A, LYS57B, LYS69A, LYS80A, LYS80B, MET201A, MET201B, MET215A, MET215B, MET234A, MET234B, PHE110A, PHE110B, PHE143A, PHE143B, PHE189A, PHE189B, PHE225A, PHE225B, PHE249A, PHE249B, PHE44A, PHE44B, PHE96A, PHE96B, PRO117A, PRO117B, PRO13B, PRO186A, PRO186B, PRO195A, PRO217A, PRO217B, PRO236A, PRO236B, PRO61A, PRO61B, PRO79A, PRO79B, PRO93A, PRO93B, SER197A, SER197B, SER92A, SER92B, THR194A, THR194B, THR219A, THR219B, THR248A, THR248B, TYR213A, TYR213B, TYR246A, TYR246B, TYR66A, TYR66B, TYR88A, TYR88B, VAL115A, VAL115B, VAL11A, VAL11B, VAL163B, VAL200A, VAL200B, VAL222A, VAL222B, VAL224A, VAL224B, VAL229A, VAL229B, VAL242A, VAL242B, VAL64A, VAL64B, VAL86A, VAL86B, VAL9A, VAL9B
• A-D: ARG202A, ASN198A, ASN198D, ASN221A, CYS196D, GLN227A, GLN227D, LEU223A, LEU223D, MET201A, MET201D, MET234A, MET234D, PHE225A, PHE225D, PRO236A, PRO236D, SER197A, SER197D, TYR246A, TYR246D, VAL200A, VAL242D
• B-D: ALA240B, ALA240D, ARG202B, ARG202D, ARG235B, ARG235D, ARG237B, ARG237D, ASN198B, ASN198D, ASN221B, ASN221D, ASP226B, ASP226D, CYS196B, CYS196D, CYS233B, CYS233D, GLN199B, GLN199D, GLN227B, GLN227D, GLN75B, GLU228B, GLU228D, GLU232B, GLU232D, GLY245B, GLY245D, HIS243B, HIS243D, HIS78B, HIS78D, LEU223B, LEU223D, LEU241B, LEU241D, LYS230B, LYS230D, LYS231B, LYS231D, LYS80B, LYS80D, MET201B, MET201D, MET234B, MET234D, PHE225B, PHE225D, PRO195B, PRO195D, PRO236B, PRO236D, SER197B, SER197D, THR194B, THR194D, THR238B, THR238D, THR239B, THR239D, THR244B, THR244D, TYR193D, TYR246B, TYR246D, VAL200B, VAL200D, VAL224B, VAL224D, VAL229B, VAL229D, VAL242B, VAL242D