3LEL
structural insight into the sequence-dependence of nucleosome positioning
Total interactions analyzed 190
Total true interactions 55
Strongest Interaction Chains O-P
Int. Res. 159
Norm. En. per Res. -5.9836
Hub Node A(6)
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Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -78.7022 -69.8698 -702.991 -851.563 156 21 43 30038 2 59 61
A-C 0.0 0.0 -4.138 -4.138 15 0 0 272 0 4 8
A-E -24.5349 -85.2663 -163.872 -273.6732 63 3 7 7129 5 27 39
A-F 0.0 0.0 -0.0014 -0.0014 2 0 0 1 0 0 0
A-G -36.3805 0.9372 -136.702 -172.1452 67 6 4 5981 0 6 10
A-H 0.0 0.0 -0.0155 -0.0155 4 0 0 11 0 2 0
B-C 0.0 0.0 -0.0597 -0.0597 7 0 0 36 0 3 3
B-D -20.3061 -29.447 -144.325 -194.0781 52 11 1 4890 2 19 26
B-G -22.0998 18.4359 -88.0464 -91.7104 50 4 5 3970 0 1 8
B-H -8.1796 -15.7759 -73.0496 -97.0051 30 6 2 2429 1 5 2
C-D -90.3906 -13.3467 -728.064 -831.8013 173 38 47 30226 4 45 42
C-E -31.7892 0.9952 -129.983 -160.7771 71 9 4 6042 0 9 9
C-F -21.1841 4.9688 -89.3456 -105.5609 47 4 5 3879 0 0 6
C-G -7.1405 -2.8146 -26.8845 -36.8396 19 1 0 839 0 8 5
C-H -5.2357 3.0417 -10.6937 -12.8877 11 1 0 371 0 0 8
D-E 0.0 0.0 -0.0429 -0.0429 5 0 0 27 0 2 0
D-F -13.6599 -17.2102 -74.8426 -105.7127 30 5 2 2461 1 5 2
D-G 0.0 2.7989 -13.2916 -10.4927 14 0 0 358 0 0 8
D-H 0.0 -4.4009 -0.6153 -5.0161 15 0 0 156 0 11 10
E-F -109.3454 -73.422 -762.76 -945.5274 160 25 45 32307 2 69 77
E-G 0.0 0.0 -1.3272 -1.3272 14 0 0 187 0 4 7
E-N 0.0 11.4696 -0.3962 11.0734 6 0 0 54 0 4 3
F-G 0.0 0.0 -0.1032 -0.1032 6 0 0 30 0 0 3
F-H -18.393 -15.8562 -142.837 -177.0861 50 13 2 4988 1 20 23
F-K -11.9122 -24.7673 -17.7574 -54.4369 13 3 0 758 0 10 5
F-L 0.0 -4.2656 -2.2773 -6.543 13 0 0 282 0 11 8
F-N 0.0 -3.314 -6.966 -10.28 22 0 0 683 0 15 14
G-H -129.2499 -13.1991 -710.16 -852.609 172 34 47 29875 4 46 43
G-M 0.0 -38.7558 -8.2559 -47.0117 16 0 0 427 3 9 8
G-N 0.0 5.3102 -0.0429 5.2673 5 0 0 12 0 6 5
H-M 0.0 -1.6142 -4.3067 -5.9209 10 0 0 274 1 5 8
K-L -106.3403 -54.4814 -726.988 -887.8097 154 31 42 30438 3 61 64
K-M -3.5268 0.0 -4.0954 -7.6222 15 0 0 272 0 4 8
K-O -22.6761 -83.3475 -157.861 -263.8846 64 4 8 6938 6 26 40
K-P 0.0 0.0 -0.0018 -0.0018 2 0 0 1 0 0 0
K-Q -25.0622 1.1595 -129.089 -152.9917 72 5 5 6012 0 8 11
K-R 0.0 0.0 -0.0389 -0.0389 3 0 0 22 0 2 0
L-M 0.0 0.0 -0.2601 -0.2601 8 0 0 73 0 2 3
L-N -23.7078 -18.9757 -132.261 -174.9444 51 11 1 4802 2 19 25
L-Q -28.9545 14.7179 -104.686 -118.9226 50 4 5 4184 0 1 8
L-R -21.3938 -16.2415 -66.1487 -103.784 33 8 2 2518 1 5 2
M-N -111.8941 -68.0231 -711.514 -891.4311 172 40 47 29668 5 46 43
M-O -23.1382 1.0505 -138.753 -160.8407 72 7 5 6066 0 9 9
M-P -23.2747 4.8929 -91.3392 -109.721 46 8 5 3911 0 0 6
M-Q -2.5738 0.0 -28.0527 -30.6265 19 1 0 840 0 8 6
M-R 0.0 2.1864 -8.7309 -6.5445 10 0 0 345 0 0 8
N-O 0.0 0.0 -0.0482 -0.0482 5 0 0 24 0 2 0
N-P -8.012 -10.7146 -67.3544 -86.081 31 3 2 2342 0 5 2
N-Q -4.444 2.6139 -9.3662 -11.1963 13 5 0 412 0 0 8
N-R 0.0 0.0 -1.5439 -1.5439 15 0 0 272 0 10 8
O-P -134.318 -79.3137 -737.76 -951.3917 159 33 44 31304 6 66 72
O-Q 0.0 0.0 -1.0974 -1.0974 13 0 0 126 0 3 8
P-Q 0.0 0.0 -0.3639 -0.3639 5 0 0 91 0 2 3
P-R -12.7373 -24.0819 -137.61 -174.4293 52 8 1 4792 2 18 26
Q-R -79.6922 -46.0575 -716.528 -842.2777 174 29 46 30092 6 45 44