3L43

crystal structure of the dynamin 3 gtpase domain bound with gdp

• Total interactions analyzed: 6
• Total true interactions: 4
• Strongest Interaction:
  • Chains: A-D
  • Int. Res.: 124
  • Norm. En. per Res.: -3.7592
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-C	0.0	-1.6384	-92.8791	-94.5175	46	1	2	3530	2	48	32
A-D	-116.5113	-6.6473	-342.984	-466.1427	124	19	13	12883	5	56	39
B-C	-89.8037	11.4384	-323.077	-401.4423	123	12	13	12796	2	51	42
B-D	0.0	-14.5659	-93.9202	-108.4861	43	5	2	3611	2	48	34

Interface residues

• A-C: ALA103A, ALA264C, ALA269C, ARG217C, ARG237A, ARG256C, ARG266C, ARG271C, ARG59A, ARG66A, ARG98A, ASP106A, ASP215C, ASP243A, ASP270C, ASP55A, ASP93A, ASP95A, GLN239A, GLU100A, GLU102A, GLU104A, GLU49A, GLU96A, GLY213C, GLY244A, HIS262C, HIS267C, ILE242A, ILE268C, LEU260C, LEU57A, LEU99A, LYS245A, LYS257C, MET272C, PHE259C, PHE56A, PHE91A, PHE94A, PRO263C, PRO58A, SER261C, TYR265C, VAL64A, VAL97A
• A-D: ALA173D, ALA177A, ALA177D, ALA182A, ALA182D, ALA186A, ALA186D, ALA190A, ALA190D, ALA42A, ALA42D, ARG157A, ARG157D, ARG237A, ARG237D, ASN178A, ASN178D, ASN183A, ASN183D, ASP180A, ASP180D, ASP185A, ASP185D, ASP208A, ASP208D, ASP211A, ASP211D, ASP215A, ASP215D, ASP218D, ASP241A, ASP241D, ASP243A, ASP243D, GLN148A, GLN148D, GLN239A, GLN239D, GLN40A, GLN40D, GLU153A, GLU153D, GLU192A, GLU192D, GLU212A, GLU212D, GLY139A, GLY139D, GLY146A, GLY146D, GLY213A, GLY213D, GLY244D, GLY38A, GLY38D, GLY39A, GLY39D, ILE140A, ILE140D, ILE152A, ILE152D, ILE156D, ILE242A, ILE242D, LEU181A, LEU181D, LEU187A, LEU187D, LEU189A, LEU189D, LEU209A, LEU209D, LEU224A, LEU224D, LEU225A, LEU225D, LEU227A, LEU227D, LYS142A, LYS142D, LYS188A, LYS188D, LYS191A, LYS191D, LYS206A, LYS206D, LYS223A, LYS223D, LYS240A, LYS240D, LYS44A, LYS44D, MET210A, MET210D, PRO144A, PRO144D, PRO150A, PRO150D, PRO176A, PRO176D, PRO226A, PRO226D, SER184A, SER184D, SER238A, SER238D, SER41A, SER41D, THR141A, THR141D, THR175D, THR179A, THR179D, THR214A, THR214D, TYR154A, TYR154D, TYR231A, TYR231D, VAL143A, VAL143D, VAL145A, VAL145D, VAL64A
• B-C: ALA173C, ALA177B, ALA177C, ALA182B, ALA182C, ALA186B, ALA186C, ALA190B, ALA190C, ALA42B, ALA42C, ARG157B, ARG157C, ARG237B, ARG237C, ASN178B, ASN178C, ASN183B, ASN183C, ASP180B, ASP180C, ASP185B, ASP185C, ASP208B, ASP208C, ASP211B, ASP211C, ASP215B, ASP215C, ASP241B, ASP241C, ASP243B, ASP243C, GLN148B, GLN148C, GLN239B, GLN239C, GLN40B, GLN40C, GLU153B, GLU153C, GLU192B, GLU192C, GLU212B, GLU212C, GLY139B, GLY139C, GLY146B, GLY146C, GLY213B, GLY213C, GLY244C, GLY38B, GLY38C, GLY39B, GLY39C, ILE140B, ILE140C, ILE152B, ILE152C, ILE156B, ILE156C, ILE242B, ILE242C, LEU181B, LEU181C, LEU187B, LEU187C, LEU189B, LEU189C, LEU209B, LEU209C, LEU224B, LEU224C, LEU225B, LEU225C, LEU227B, LEU227C, LYS142B, LYS142C, LYS188B, LYS188C, LYS191B, LYS191C, LYS206B, LYS206C, LYS223B, LYS223C, LYS240B, LYS240C, LYS44B, LYS44C, MET210B, MET210C, PRO144B, PRO144C, PRO150C, PRO176B, PRO176C, PRO226B, PRO226C, SER184B, SER184C, SER238B, SER238C, SER41B, SER41C, THR141B, THR141C, THR175C, THR179B, THR179C, THR214B, THR214C, TYR154B, TYR154C, TYR231B, TYR231C, VAL143B, VAL143C, VAL145B, VAL145C, VAL64B
• B-D: ALA103B, ALA264D, ALA269D, ARG217D, ARG237B, ARG256D, ARG266D, ARG271D, ARG59B, ARG98B, ASP106B, ASP215D, ASP243B, ASP270D, ASP55B, ASP93B, ASP95B, GLN239B, GLU100B, GLU102B, GLU49B, GLU96B, GLY213D, GLY244B, HIS262D, HIS267D, ILE242B, ILE268D, LEU260D, LEU57B, LEU99B, LYS245B, LYS257D, MET272D, PHE259D, PHE56B, PHE91B, PHE94B, PRO263D, PRO58B, SER261D, TYR265D, VAL97B