3KS7

crystal structure of putative peptide:n-glycosidase f (pngase f) (yp_210507.1) from bacteroides fragilis nctc 9343 at 2.30 a resolution

• Total interactions analyzed: 6
• Total true interactions: 6
• Strongest Interaction:
  • Chains: C-D
  • Int. Res.: 135
  • Norm. En. per Res.: -4.638
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-107.2623	-66.1386	260.501	87.1002	133	23	24	18701	8	70	57
A-C	0.0	0.0	-3.5	-3.5	22	1	0	339	0	8	2
A-D	0.0	0.0	-0.075	-0.075	8	0	0	33	0	4	5
B-C	0.0	0.0	-0.0059	-0.0059	6	0	0	5	0	4	1
B-D	-3.7476	0.9318	-82.0803	-84.8961	54	5	1	3188	0	12	17
C-D	-93.3316	-59.0311	-473.765	-626.1277	135	18	23	18744	7	69	57

Interface residues

• A-B: ALA231A, ALA231B, ALA319A, ALA319B, ALA337A, ALA337B, ALA355A, ALA355B, ARG174A, ARG174B, ARG175A, ARG175B, ARG229B, ARG315A, ARG315B, ARG322A, ARG322B, ARG323A, ARG323B, ARG335A, ARG335B, ARG361A, ARG361B, ARG97A, ASN82A, ASN82B, ASP233A, ASP233B, ASP316A, ASP316B, ASP317A, ASP317B, ASP358A, ASP358B, CYS232A, CYS232B, CYS318A, CYS318B, GLN296A, GLU183A, GLU183B, GLU342A, GLU347A, GLU347B, GLU349A, GLU349B, GLU351A, GLU351B, GLU352A, GLU352B, GLY329A, GLY329B, GLY341A, GLY341B, ILE179A, ILE179B, ILE333A, ILE333B, ILE340A, ILE340B, LEU170A, LEU170B, LEU230A, LEU230B, LEU332A, LEU332B, LEU336A, LEU336B, LEU354A, LEU354B, LEU359A, LEU359B, LYS173A, LYS173B, LYS181A, LYS181B, LYS334A, LYS334B, LYS348A, LYS348B, PHE321A, PHE321B, PHE324A, PHE324B, PRO176A, PRO176B, PRO180A, PRO180B, PRO236A, PRO236B, PRO353A, PRO353B, SER171A, SER171B, SER172A, SER172B, SER228A, SER228B, SER320A, SER320B, SER338A, SER338B, SER356A, SER356B, SER357A, SER357B, SER360A, SER360B, THR328A, THR328B, THR346A, THR346B, TRP182A, TRP182B, TRP314A, TRP314B, TRP331A, TRP331B, TRP98B, TYR178A, TYR178B, TYR339A, TYR339B, TYR345A, TYR345B, VAL177A, VAL177B, VAL234A, VAL234B, VAL330A, VAL330B, VAL350A, VAL350B
• A-C: ALA273A, ALA381A, ASN39C, ASN41C, ASP304A, ASP57C, GLU38C, GLY272A, GLY378A, GLY58C, GLY60C, HIS385A, ILE377A, LEU218C, LEU380A, LYS271A, LYS274A, LYS306A, PRO382A, THR379A, THR59C, VAL40C
• A-D: ARG298A, ARG298D, ASN310D, GLN296A, GLU307D, GLU393A, ILE312A, LYS306D
• B-C: ALA231C, ALA28C, ARG229C, GLU38B, GLY58B, PRO35B
• B-D: ALA381D, ARG174B, ARG175B, ARG43B, ASN165B, ASN166B, ASN167B, ASN185B, ASN39B, ASN41B, ASN94B, ASP168B, ASP266D, ASP304D, ASP96B, GLU183B, GLU215B, GLY159B, GLY161B, GLY216B, GLY272D, GLY305D, GLY383D, GLY95B, HIS162B, HIS385D, ILE160B, LEU170B, LEU218B, LEU380D, LYS181B, LYS271D, LYS274D, LYS306D, LYS384D, PHE267D, PHE387D, PRO270D, PRO326B, PRO382D, SER164B, SER169B, SER184B, SER214B, SER93B, THR265D, THR268D, THR379D, THR386D, THR388D, TRP182B, TYR163B, VAL269D, VAL303D
• C-D: ALA231C, ALA231D, ALA319C, ALA319D, ALA337C, ALA337D, ALA355C, ALA355D, ARG174C, ARG174D, ARG175C, ARG175D, ARG229C, ARG315C, ARG315D, ARG322C, ARG322D, ARG323C, ARG323D, ARG335C, ARG335D, ARG361C, ARG361D, ARG97C, ASN82C, ASN82D, ASP233C, ASP233D, ASP316C, ASP316D, ASP317C, ASP317D, ASP358C, ASP358D, CYS232C, CYS232D, CYS318C, CYS318D, GLN296D, GLU183C, GLU183D, GLU342C, GLU342D, GLU347C, GLU347D, GLU349C, GLU349D, GLU351C, GLU351D, GLU352C, GLU352D, GLY329C, GLY329D, GLY341C, GLY341D, ILE179C, ILE179D, ILE333C, ILE333D, ILE340C, ILE340D, LEU170C, LEU170D, LEU230C, LEU230D, LEU26D, LEU332C, LEU332D, LEU336C, LEU336D, LEU354C, LEU354D, LEU359C, LEU359D, LYS173C, LYS173D, LYS181C, LYS181D, LYS334C, LYS334D, LYS348C, LYS348D, PHE321C, PHE321D, PHE324C, PHE324D, PRO176C, PRO176D, PRO180C, PRO180D, PRO236C, PRO353C, PRO353D, SER169C, SER171C, SER171D, SER172C, SER172D, SER228C, SER228D, SER320C, SER320D, SER338C, SER338D, SER356C, SER356D, SER357C, SER357D, SER360C, SER360D, THR328C, THR328D, THR346C, THR346D, TRP182C, TRP182D, TRP314C, TRP314D, TRP331C, TRP331D, TRP98D, TYR178C, TYR178D, TYR339C, TYR339D, TYR345C, TYR345D, VAL177C, VAL177D, VAL234C, VAL234D, VAL330C, VAL330D, VAL350C, VAL350D