3KGD

crystal structure of e. coli rna 3' cyclase

• Total interactions analyzed: 6
• Total true interactions: 5
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 64
  • Norm. En. per Res.: -3.6519
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-96.345	-8.9831	-128.396	-233.7241	64	7	0	4702	2	27	24
A-C	-2.1929	4.3512	-69.1498	-66.9915	42	6	0	2936	0	15	13
A-D	0.0	2.5627	-79.3983	-76.8356	58	11	0	3267	0	6	11
B-C	0.0	0.0	-0.4277	-0.4277	9	0	0	86	0	0	4
C-D	-36.8508	-24.2263	-70.481	-131.5581	49	7	2	2807	1	15	14

Interface residues

• A-B: ALA206A, ALA214A, ALA214B, ARG137A, ARG137B, ARG138A, ARG138B, ARG193A, ARG193B, ARG203A, ARG203B, ARG229A, ARG229B, ASN223A, ASN223B, ASN226A, ASN226B, GLN152A, GLN152B, GLN191A, GLN191B, GLN222A, GLN222B, GLN231A, GLN231B, GLU195A, GLU195B, GLU207A, GLU207B, GLU221A, GLU221B, GLU242A, GLU242B, GLY194A, GLY194B, HIS220A, HIS220B, HIS225A, HIS225B, ILE189A, ILE210A, ILE210B, ILE224A, ILE224B, LEU156B, LEU197A, LEU197B, LEU198A, LEU198B, LEU219A, LEU219B, LEU227A, LEU227B, MET192A, MET192B, PHE217A, PRO228A, PRO228B, SER218A, SER218B, VAL190A, VAL190B, VAL196A, VAL196B
• A-C: ALA113A, ALA65A, ARG118A, ARG319C, ARG324C, ARG4C, ARG85A, ARG90A, ASP114A, ASP88A, CYS63A, GLN32C, GLU171A, GLU318C, GLU339C, GLU61A, GLY115A, GLY297C, GLY64A, GLY82A, GLY86A, GLY87A, ILE338C, ILE62A, ILE6C, LEU110A, LEU321C, LYS3C, MET2C, PHE320C, PHE325C, PRO116A, PRO322C, SER117A, SER326C, THR30C, THR60A, THR66A, THR83A, TYR89A, VAL323C, VAL84A
• A-D: ALA113A, ALA176A, ALA211D, ALA260D, ALA296A, ALA298A, ARG203D, ARG208D, ARG257D, ARG4A, ARG4A5, ARG80A, ARG85A, ASN179A, ASP114A, CB9.2829110.25079, GLN32A, GLU207D, GLU255D, GLU261D, GLY115A, GLY148A, GLY200D, GLY297A, GLY31A, GLY82A, HIS204D, ILE147A, ILE29A, ILE6A, LEU110A, LEU295A, LEU321A, LYS256D, MET5A, PHE112A, PHE178A, PHE320A, PHE34A, PRO174A, PRO202D, PRO233D, PRO322A, PRO33A, PRO81A, SER177A, SER259D, SER27A, THR180A, THR30A, THR83A, TRP111A, VAL175A, VAL201D, VAL205D, VAL258D, VAL262D, VAL84A
• B-C: ARG76C, ASN179B, GLU68C, LEU78C, MET5C, PHE178B, SER177B, THR180B, THR35C
• C-D: ALA163D, ALA315C, ALA92D, ALA96D, ARG157D, ARG229D, ARG324C, ARG335C, ARG50D, ASP230D, ASP331C, CYS308C, GLN12C, GLN231D, GLU318C, GLU329C, GLY123D, GLY164D, GLY165D, GLY166D, GLY200D, GLY232D, GLY332C, GLY94D, GLY97D, HIS305C, ILE314C, ILE328C, ILE93D, LEU310C, LEU311C, LEU327C, LEU72D, LYS256D, PHE160D, PHE325C, PRO162D, PRO228D, PRO233D, PRO306C, SER122D, SER307C, SER326C, SER95D, THR312C, THR330C, THR334C, TYR161D, VAL333C