3KCR

ribosome-secy complex. this entry 3kcr contains 50s ribosomal subnit. the 30s ribosomal subunit can be found in pdb entry 3kc4

• Total interactions analyzed: 595
• Total true interactions: 37
• Strongest Interaction:
  • Chains: K-P
  • Int. Res.: 70
  • Norm. En. per Res.: -4.0094
• Hub Node: A(5)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-23.7381	-27.7261	-480.028	-531.4922	155	16	19	19064	3	20	30
A-C	-34.9719	-29.6823	-322.297	-386.9512	99	7	12	13670	1	22	20
A-T	0.0	4.2025	-63.964	-59.7615	43	3	0	2630	0	15	24
A-U	0.0	0.0	-112.618	-112.618	32	4	2	3539	0	0	4
A-Y	0.0	0.0	-14.4305	-14.4305	13	0	0	615	0	0	3
B-C	0.0	3.1907	-9.4157	-6.2251	10	0	0	597	0	1	2
B-T	-9.5654	0.0	-21.5946	-31.16	17	1	1	851	0	2	5
B-Y	0.0	0.0	-26.0094	-26.0094	27	3	0	1517	0	1	1
6-H	-12.2522	9.1554	-38.9641	-42.0609	22	1	0	1579	2	5	4
D-J	0.0	1.5425	-36.4291	-34.8866	11	1	0	1094	0	0	5
D-K	0.0	-5.3171	-24.484	-29.8011	16	3	0	1042	0	2	6
D-N	-6.3482	8.2947	-23.2193	-21.2728	13	5	0	972	0	0	9
D-P	-19.8456	3.548	-126.421	-142.7186	58	9	2	4705	0	13	13
E-L	-8.4715	13.768	-115.344	-110.0476	43	6	3	4065	0	8	7
E-Q	0.0	1.431	-0.3004	1.1306	10	0	0	102	0	0	5
E-2	0.0	0.0	-0.0045	-0.0045	3	0	0	6	0	0	0
E-3	0.0	0.0	-0.0003	-0.0003	2	0	0	1	0	0	0
G-4	0.0	0.0	-9.0708	-9.0708	8	0	0	490	0	2	6
H-X	0.0	8.9009	-69.3801	-60.4792	29	4	0	2317	0	6	10
J-Q	-11.5583	24.6446	-203.509	-190.4227	52	11	6	7435	0	8	26
J-R	0.0	0.0	-19.8495	-19.8495	16	0	0	951	0	0	4
K-P	-34.3141	-32.3765	-213.968	-280.6586	70	15	3	7018	8	33	32
L-Q	0.0	0.0	-0.0237	-0.0237	6	0	0	26	0	0	3
L-R	0.0	1.7167	-4.2601	-2.5434	13	0	0	401	0	0	7
L-3	-22.9045	23.1471	-183.618	-183.3754	54	10	4	6659	0	1	27
M-V	-11.1824	-12.3454	-77.5292	-101.057	43	3	4	2999	0	4	7
M-W	0.0	0.0	-0.5935	-0.5935	8	0	0	159	0	0	3
N-S	0.0	0.0	-1.2563	-1.2563	5	0	0	77	0	3	0
N-0	0.0	21.3611	-113.597	-92.2359	38	3	5	4579	0	10	19
O-W	0.0	0.0	-0.0639	-0.0639	5	0	0	28	0	2	1
Q-R	-47.5283	-8.6163	-234.663	-290.8077	97	12	8	8792	1	19	51
Q-0	0.0	0.0	-0.4212	-0.4212	11	0	0	122	0	0	5
S-0	0.0	-1.9519	-85.2263	-87.1782	40	3	7	3485	0	11	10
S-2	0.0	0.0	-0.0728	-0.0728	4	0	0	30	0	0	1
T-Y	0.0	11.3439	-114.806	-103.4621	43	6	4	4582	0	9	14
U-Y	0.0	0.0	-0.0004	-0.0004	2	0	0	1	0	0	0
1-3	0.0	0.0	-28.6388	-28.6388	19	0	0	1096	0	0	14

Interface residues

• A-B: ALA11B, ALA14B, ALA175A, ALA176A, ALA186A, ALA226A, ALA35B, ALA37B, ALA393A, ALA41B, ALA48A, ALA50A, ALA58B, ALA9B, ARG12B, ARG15B, ARG19B, ARG230A, ARG231A, ARG232A, ARG26B, ARG382A, ARG423A, ARG66A, ASP31B, ASP44A, CYS228A, CYS42A, GLN180A, GLN51A, GLU13B, GLU190A, GLU227A, GLU32B, GLU426A, GLY171A, GLY177A, GLY185A, GLY188A, GLY191A, GLY31A, GLY41A, GLY43B, GLY48B, GLY49A, GLY51B, GLY68A, HIS55B, ILE174A, ILE182A, ILE217A, ILE22B, ILE32A, ILE339A, ILE39A, ILE420A, ILE43A, ILE44B, ILE49B, ILE50B, ILE52A, ILE53B, ILE54B, ILE61B, ILE67A, ILE71A, LEU172A, LEU187A, LEU221A, LEU254A, LEU256A, LEU27A, LEU34A, LEU34B, LEU36A, LEU387A, LEU415A, LEU416A, LEU428A, LEU429A, LEU42B, LEU46B, LEU47B, LYS257A, LYS27B, LYS30B, LYS38B, LYS62B, LYS66B, MET222A, MET229A, MET390A, MET40A, MET424A, PHE10B, PHE173A, PHE183A, PHE220A, PHE38A, PHE394A, PRO189A, PRO24B, PRO255A, PRO28B, PRO385A, PRO386A, PRO57B, SER179A, SER391A, SER392A, SER419A, SER45B, THR16B, THR181A, THR216A, THR25B, THR29B, THR30A, THR40B, THR417A, THR47A, THR59B, THR69A, THR7B, TRP194A, TRP23B, TYR225A, TYR260A, TYR33B, TYR37A, TYR383A, TYR422A, TYR425A, TYR52B, TYR60B, VAL178A, VAL184A, VAL18B, VAL21B, VAL223A, VAL224A, VAL258A, VAL259A, VAL335A, VAL35A, VAL36B, VAL389A, VAL395A, VAL39B, VAL414A, VAL418A, VAL421A, VAL45A, VAL56B, VAL8B
• A-C: ALA105A, ALA39C, ALA45C, ALA48A, ALA50A, ARG104A, ARG27C, ARG51C, ASN103A, ASP44A, CYS110A, CYS42A, GLN108A, GLN146A, GLU102A, GLU13A, GLU159A, GLU15A, GLU21C, GLU31C, GLU44C, GLU9A, GLY109A, GLY150A, GLY35C, GLY41A, GLY49A, GLY68A, HIS32C, ILE100A, ILE11A, ILE145A, ILE147A, ILE152A, ILE153A, ILE155A, ILE160A, ILE21A, ILE26C, ILE32A, ILE34C, ILE39A, ILE42C, ILE43A, ILE43C, ILE46C, ILE5A, ILE71A, ILE7A, LEU106A, LEU139A, LEU142A, LEU154A, LEU157A, LEU16A, LEU34A, LEU36A, LEU47C, LEU70A, LEU8A, LYS10A, LYS112A, LYS163A, LYS25C, LYS29C, MET40A, PHE107A, PHE149A, PHE23C, PHE40C, PRO101A, PRO12A, PRO17A, PRO30C, PRO6A, SER24C, THR22C, THR30A, THR37C, THR47A, THR48C, THR69A, TRP29A, TYR156A, TYR164A, TYR37A, TYR46A, TYR49C, VAL143A, VAL14A, VAL161A, VAL28C, VAL33A, VAL33C, VAL35A, VAL36C, VAL38C, VAL41C, VAL45A
• A-T: ALA20T, ALA373A, ARG244A, ARG367A, ARG379A, ARG382A, ARG69T, ARG73T, ASN236A, GLN242A, GLN250A, GLN371A, GLN72T, GLU18T, GLU25T, GLU370A, GLY243A, GLY365A, GLY369A, GLY71T, GLY75T, HIS378A, HIS70T, ILE233A, ILE366A, ILE376A, ILE74T, LYS19T, LYS239A, LYS26T, LYS357A, LYS374A, LYS68T, SER17T, SER21T, THR22T, THR372A, TYR237A, TYR375A, VAL16T, VAL234A, VAL235A, VAL246A
• A-U: ALA248A, ALA439A, ALA441A, ALA50U, ARG240A, ASN52U, GLN241A, GLN45U, GLN53U, GLU435A, GLY55U, GLY56U, HIS437A, ILE440A, LEU436A, LEU51U, LYS432A, LYS442A, LYS60U, PHE362A, PRO364A, PRO438A, PRO47U, PRO49U, PRO54U, SER434A, TYR247A, VAL246A, VAL363A, VAL433A, VAL48U, VAL58U
• A-Y: ARG230A, ARG231A, ARG232A, GLN36Y, GLN38Y, GLY35Y, ILE233A, LEU254A, LEU256A, LEU37Y, MET229A, PRO255A, SER34Y
• B-C: ALA58B, ARG51C, GLY50C, ILE61B, LEU65B, LYS62B, LYS66B, THR48C, THR59B, TYR49C
• B-T: ALA14B, ARG19B, ASN92T, GLN91T, GLU13B, GLU17B, GLY90T, ILE22B, LEU93T, LYS20B, LYS26T, PHE51T, PRO24B, THR16B, TRP23B, VAL18B, VAL21B
• B-Y: ALA32Y, ALA33Y, ARG26B, ARG29Y, ASN27Y, ASP31B, GLN31Y, GLN36Y, GLN38Y, GLN39Y, GLU32B, GLY35Y, ILE22B, LEU28Y, LEU37Y, LEU42Y, LEU43Y, LYS27B, MET30Y, PHE26Y, PRO24B, PRO28B, SER34Y, THR25B, THR29B, TRP23B, VAL21B
• 6-H: ALA1216, ARG116H, ARG1326, ARG1666, ASN1336, ASP1206, ASP1866, GLN133H, GLU114H, GLU137H, GLY1686, HIS135H, LEU1296, MET1316, PHE132H, PHE139H, PRO1306, SER113H, SER136H, VAL115H, VAL1196, VAL134H
• D-J: GLY158D, GLY79J, GLY82J, GLY83J, HIS80J, ILE81J, LYS154D, LYS157D, LYS159D, LYS160D, PHE156D
• D-K: ARG13D, ARG69K, ARG70K, ASP18D, ASP72K, GLY19D, GLY73K, ILE14D, ILE22D, PHE15D, PRO23D, PRO71K, SER21D, SER74K, THR16D, VAL20D
• D-N: ALA196D, ARG2N, ARG4N, GLY115D, GLY117D, HIS3N, LYS114D, LYS116D, LYS5N, MET1N, PHE118D, SER6N, THR197D
• D-P: ARG13D, ARG179D, ARG184D, ARG50P, ASN2P, ASP18D, GLN11P, GLN14P, GLN6P, GLN74P, GLN9P, GLU10P, GLU17D, GLU183D, GLU28D, GLU8P, GLY10D, GLY198D, GLY19D, GLY53P, HIS55P, HIS76P, ILE14D, ILE22D, ILE27D, ILE3P, ILE4P, LEU186D, LEU187D, LEU188D, LEU54P, LEU7P, LYS13P, LYS37P, LYS5P, LYS7D, LYS8D, MET11D, MET12P, PHE15D, PHE73P, PRO23D, PRO78P, SER1P, SER21D, SER56P, SER77P, THR12D, THR16D, THR75P, TRP30P, VAL20D, VAL24D, VAL26D, VAL32P, VAL79P, VAL80P, VAL9D
• E-L: ALA182E, ALA26E, ALA36E, ALA9L, ARG117E, ARG21L, ARG2L, ASN24E, ASN4L, ASP145E, ASP184E, GLN30E, GLN94E, GLU10L, GLU111E, GLU25E, GLY11L, GLY44L, HIS29E, ILE108E, ILE181E, LEU112E, LEU118E, LEU180E, LEU27E, LEU3L, LEU6L, LYS13L, LYS185E, PHE183E, PHE23E, PHE85E, PRO8L, SER12L, SER179E, SER7L, THR5L, VAL178E, VAL186E, VAL28E, VAL31E, VAL32E, VAL33E
• E-Q: ALA1Q, ALA45E, ARG2Q, ARG40E, ARG44E, ARG79E, GLN46E, GLN90E, LYS4Q, VAL83E
• E-2: ARG392, GLY54E, LYS57E
• E-3: ARG88E, PRO13
• G-4: ALA294, ARG169G, GLU304, HIS334, LYS171G, LYS324, LYS344, PRO314
• H-X: ALA23H, ALA26H, ARG27H, ARG36X, ARG44X, ARG56X, ASN28H, ASP59X, GLN33H, GLU40X, GLY24H, GLY34H, HIS35X, ILE58X, ILE63X, LEU30H, LYS35H, LYS43X, LYS53X, MET1H, MET55X, PHE29H, PHE37X, PHE45X, PRO32H, SER41X, TRP38X, VAL31H, VAL39X
• J-Q: ALA42J, ALA62Q, ALA66Q, ALA67Q, ALA68Q, ALA6J, ALA95Q, ALA98Q, ARG34J, ARG35J, ARG37J, ARG57Q, ARG63Q, ARG69Q, ARG91Q, ASN65Q, ASN71Q, ASP96Q, GLN55Q, GLN58Q, GLN70Q, GLU31J, GLU43J, GLY38J, HIS40J, ILE61Q, ILE64Q, ILE93Q, ILE97Q, LEU59Q, LEU94Q, LYS102Q, LYS12J, LYS2J, LYS39J, LYS41J, LYS92Q, MET1J, PHE100Q, PHE105Q, PHE4J, PHE56Q, PRO46J, SER74Q, THR3J, THR45J, THR50J, THR5J, TRP60Q, TYR44J, TYR75Q, VAL99Q
• J-R: ARG13R, ARG21R, GLN11R, GLN18R, HIS12R, LYS10R, LYS2J, MET1J, PHE4J, SER15R, THR19R, THR3J, THR5J, TYR2R, VAL14R, VAL20R
• K-P: ALA10K, ALA118K, ALA82K, ARG100P, ARG104K, ARG107K, ARG38P, ARG61P, ARG63K, ARG69K, ARG70K, ARG71P, ARG77K, ASN65P, ASN81K, ASP72K, ASP79K, CYS83K, GLN40P, GLN74P, GLU101P, GLU105K, GLU120K, GLU33P, GLU67P, GLU70P, GLY100K, GLY66P, GLY67K, GLY68P, GLY73K, GLY80K, HIS55P, HIS76P, ILE63P, ILE76K, LEU7K, LYS62P, LYS65K, LYS66K, PHE42P, PHE73P, PHE78K, PHE99K, PRO101K, PRO119K, PRO71K, PRO78P, SER56P, SER64P, SER74K, SER77P, THR103K, THR59P, THR64K, THR75P, TRP30P, VAL102K, VAL121K, VAL29P, VAL31P, VAL32P, VAL60P, VAL62K, VAL68K, VAL69P, VAL72P, VAL75K, VAL79P, VAL80P
• L-Q: ARG12Q, ARG21L, ARG5Q, GLY22L, GLY24L, ILE23L
• L-R: ARG84R, GLN86R, GLY24L, GLY26L, GLY28L, HIS82R, ILE23L, LEU27L, LYS29L, LYS81R, LYS85R, SER25L, TYR83R
• L-3: ALA103, ALA263, ALA473, ALA593, ALA93, ARG123, ARG293, ARG47L, ARG48L, ARG59L, ARG60L, ARG73, ASN273, ASP533, CYS603, GLN54L, GLU51L, GLY65L, GLY83, HIS233, HIS253, HIS303, ILE33, ILE583, LEU283, LEU323, LEU433, LEU563, LEU57L, LEU613, LEU61L, LYS113, LYS143, LYS223, LYS23, LYS243, LYS43, LYS463, LYS63L, MET55L, PHE133, PHE213, PHE64L, PHE66L, PRO13, PRO56L, PRO623, PRO62L, SER68L, THR67L, TYR58L, VAL493, VAL573, VAL63
• M-V: ALA21M, ALA35M, ALA52V, ALA54V, ARG18M, ARG38M, ARG79V, ASP25M, GLN51V, GLN78V, GLN87V, GLN97M, GLU55V, GLY19M, GLY99M, HIS44V, HIS80V, ILE89V, LEU20M, LEU86V, LYS100M, LYS34M, LYS53V, LYS83V, LYS85V, MET136M, PHE130M, PHE56V, PRO81V, PRO84V, PRO98M, SER58V, THR129M, THR132M, THR134M, THR24M, TYR57V, TYR82V, VAL131M, VAL135M, VAL26M, VAL36M, VAL77V
• M-W: ARG10M, GLY7W, GLY85M, HIS13M, LYS11M, LYS86M, SER8W, THR9W
• N-S: ASN107N, ASN40S, ASP106N, LYS42S, PHE102N
• N-0: ALA111N, ALA440, ALA550, ARG118N, ARG390, ARG490, ARG510, ARG96N, ASP117N, CYS100N, GLU114N, GLU120N, GLY101N, GLY460, GLY500, HIS370, HIS400, HIS410, ILE113N, ILE33N, ILE420, ILE540, ILE97N, LEU115N, LEU380, LEU38N, LEU98N, LYS35N, LYS520, LYS560, LYS99N, MET110N, SER119N, THR430, TYR112N, TYR480, VAL116N, VAL530
• O-W: ALA48W, GLN19O, GLU20O, GLY22O, VAL50W
• Q-R: ALA104Q, ALA107Q, ALA112Q, ALA114Q, ALA115Q, ALA3R, ALA41Q, ALA42R, ALA45Q, ALA85Q, ALA95Q, ARG12Q, ARG13R, ARG47Q, ARG49Q, ARG50Q, ARG52Q, ARG63Q, ARG78R, ARG79R, ARG80R, ARG84R, ARG91Q, ASN43R, ASP101Q, ASP90Q, ASP96Q, GLN11R, GLN36Q, GLN43Q, GLN6R, GLN86R, GLN87R, GLU110Q, GLU45R, GLU46R, GLU88Q, GLY42Q, GLY44R, GLY50R, GLY88R, GLY9R, HIS12R, HIS82R, HIS89R, ILE16Q, ILE39Q, ILE41R, ILE49R, ILE74R, ILE89Q, ILE93Q, ILE97Q, LEU108Q, LEU39R, LEU82Q, LEU94Q, LYS102Q, LYS10R, LYS111Q, LYS113Q, LYS15Q, LYS40Q, LYS48R, LYS53Q, LYS73R, LYS76R, LYS85R, MET1R, MET40R, PHE100Q, PHE105Q, PHE35Q, PHE53R, PHE5R, PHE77R, PRO52R, SER7R, SER86Q, THR106Q, TYR2R, TYR44Q, TYR46Q, TYR83R, VAL103Q, VAL109Q, VAL14R, VAL38Q, VAL38R, VAL47R, VAL4R, VAL51R, VAL54R, VAL72R, VAL75R, VAL87Q, VAL99Q
• Q-0: ALA26Q, ARG27Q, ARG29Q, ARG90, ASN50, GLY25Q, LYS60, PRO70, SER100, THR80, VAL30Q
• S-0: ALA200, ALA21S, ALA230, ALA32S, ALA43S, ALA440, ALA44S, ARG120, ARG150, ARG160, ASN40S, ASP190, ASP22S, ASP34S, GLN15S, GLN31S, GLU350, GLY130, HIS370, ILE24S, ILE35S, LEU19S, LEU210, LEU23S, LEU270, LEU33S, LEU36S, LEU380, LYS16S, LYS27S, LYS360, LYS41S, SER30S, THR220, THR250, THR37S, THR39S, TYR38S, VAL20S, VAL240
• S-2: ALA89S, GLY91S, LYS90S, MET12
• T-Y: ALA13T, ALA32Y, ALA33Y, ALA35T, ALA46T, ARG12T, ARG23Y, ARG29Y, ARG3T, ARG6T, ASN20Y, ASN27Y, GLN25Y, GLN31Y, GLU17Y, GLU24Y, GLU42T, GLU4T, GLU5T, LEU11T, LEU14Y, LEU18Y, LEU19Y, LEU21Y, LEU22Y, LEU28Y, LEU32T, LEU50T, LEU7T, LEU8T, LYS33T, LYS49T, LYS54Y, LYS9T, MET30Y, PHE26Y, PHE51T, PRO14T, SER34Y, VAL10T, VAL16T, VAL34T, VAL47T
• U-Y: LYS91U, MET1Y
• 1-3: ARG443, GLY31, ILE313, ILE81, LEU323, LYS343, LYS353, LYS371, LYS403, LYS71, LYS91, PHE191, PRO401, THR211, THR221, THR231, THR333, THR373, TYR201