3KC4

ribosome-secy complex. this entry 3kc4 contains 30s ribosomal subnit. the 50s ribosomal subunit can be found in pdb entry 3kcr

• Total interactions analyzed: 210
• Total true interactions: 22
• Strongest Interaction:
  • Chains: D-E
  • Int. Res.: 53
  • Norm. En. per Res.: -4.9308
• Hub Node: C(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
B-E	0.0	0.0	-0.4814	-0.4814	4	0	0	111	0	2	3
B-H	0.0	0.0	-2.6551	-2.6551	5	0	0	149	0	0	2
C-E	0.0	0.0	-1.315	-1.315	6	0	0	155	0	4	4
C-J	-4.8518	6.283	-127.834	-126.4029	60	4	3	4885	0	12	7
C-N	-7.8397	6.0048	-342.685	-344.5199	81	7	5	12120	2	39	39
D-E	-48.1073	-49.6539	-163.573	-261.3342	53	10	1	5034	3	11	13
E-H	-11.3355	-21.285	-195.243	-227.8635	52	8	2	6013	0	15	15
F-R	-41.5399	-9.6968	-252.423	-303.6597	66	14	3	8574	1	14	28
G-I	-9.4262	0.3834	-88.3527	-97.3955	38	4	0	3278	2	15	17
G-K	0.0	0.0	-71.8403	-71.8403	30	1	3	2553	0	1	3
H-L	0.0	0.0	-2.5704	-2.5704	8	0	0	200	0	0	0
H-Q	0.0	0.0	-1.872	-1.872	11	0	0	341	0	2	6
I-J	0.0	0.0	-38.5606	-38.5606	19	2	0	1465	0	10	15
I-N	0.0	0.0	-24.151	-24.151	13	0	0	893	0	0	3
J-N	-37.5215	-5.9667	-146.477	-189.9652	49	4	3	5516	0	14	20
K-R	-9.961	0.0	-12.5382	-22.4992	17	2	0	612	0	3	7
K-U	-12.4765	28.7138	-280.908	-264.6706	79	13	6	10423	0	29	38
L-Q	-8.569	0.0	-48.0634	-56.6324	18	1	3	1675	0	0	7
M-S	0.0	-1.3611	-78.2955	-79.6566	45	6	1	3108	1	9	20
N-S	-7.2817	-30.1835	-126.385	-163.8501	54	1	1	5864	4	20	27
Q-T	0.0	0.0	-0.0538	-0.0538	2	0	0	19	0	0	0
R-U	0.0	-4.723	-3.834	-8.557	13	0	0	420	0	4	7

Interface residues

• B-E: ARG68E, GLU64E, LYS104B, LYS65E
• B-H: ALA18H, ALA19H, ASN20H, LYS25B, PRO24B
• C-E: ALA57E, ARG131C, GLU54E, LYS134C, PRO56E, VAL55E
• C-J: ALA12J, ALA23C, ALA60C, ALA61J, ALA94J, ARG16J, ARG45J, ARG48J, ARG58C, ARG64C, ARG68J, ARG9J, ASN18C, ASN24C, ASN58J, ASP14J, ASP63J, ASP97J, GLN2C, GLU47J, GLU57C, GLU66J, GLY12C, GLY8C, GLY95J, HIS15J, HIS5C, HIS70J, ILE13C, ILE18J, ILE53J, ILE67J, ILE9C, LEU11C, LEU17J, LEU32C, LEU71J, LYS11J, LYS26C, LYS3C, LYS46J, LYS61C, PHE13J, PHE22C, PHE28C, PHE49J, PRO55J, PRO59C, SER19C, SER54J, THR20C, THR25C, THR44J, THR69J, TRP17C, TRP21C, TYR65J, VAL4C, VAL96J, VAL98J
• C-N: ALA112C, ALA29C, ALA86N, ALA87N, ALA98N, ARG10C, ARG39C, ARG53C, ARG58C, ARG64N, ARG74N, ARG84N, ARG89N, ASN184C, ASN18C, ASN24C, ASN31C, ASN7C, ASP182C, ASP30C, ASP33C, ASP35C, GLN40C, GLN65N, GLU27C, GLU57C, GLU85N, GLU91N, GLY12C, GLY77N, GLY8C, GLY90N, GLY94N, HIS5C, HIS68C, ILE13C, ILE181C, ILE54C, ILE56C, ILE92N, ILE9C, LEU11C, LEU177C, LEU32C, LEU73N, LEU78N, LEU95N, LYS113C, LYS15C, LYS26C, LYS37C, LYS3C, LYS75N, LYS82N, LYS96N, LYS97N, MET88N, PHE22C, PHE28C, PHE36C, PHE72N, PHE76N, PRO16C, PRO6C, PRO93N, SER186C, SER19C, SER34C, SER52C, SER79N, SER99N, THR185C, THR20C, THR25C, TRP17C, TRP21C, TYR183C, VAL14C, VAL4C, VAL55C, VAL83N
• D-E: ALA106E, ALA109E, ALA112E, ALA78D, ALA79D, ARG111E, ARG187D, ARG55D, ASN121E, ASN195D, ASN84D, ASN88D, ASP49D, GLN53D, GLU100E, GLU115E, GLU196D, GLU201D, GLU56D, GLU87D, GLY101E, GLY103E, GLY107E, GLY108E, GLY51D, GLY83D, GLY86D, HIS120E, HIS197D, ILE104E, ILE105E, ILE199D, LEU114E, LEU123E, LEU198D, LEU202D, LEU47D, LEU54D, LEU89D, LYS13E, LYS205D, MET110E, SER204D, SER48D, SER99E, THR102E, THR85D, TYR203D, TYR50D, TYR75D, VAL122E, VAL200D, VAL52D
• E-H: ALA129H, ALA153E, ALA154E, ALA69H, ALA74E, ALA96H, ALA98E, ARG113H, ARG156E, ASN145E, ASN147E, ASN76E, GLN66H, GLN81E, GLU150E, GLU41H, GLU42H, GLU72H, GLY157E, GLY43H, GLY97H, GLY99H, HIS82E, ILE100H, ILE45H, LEU39H, LEU98H, LYS155E, LYS158E, LYS40H, LYS63H, LYS68H, LYS93H, MET146E, MET151E, MET95H, PHE44H, PHE65H, PRO149E, PRO83E, PRO97E, SER148E, SER73H, TYR127H, TYR64H, VAL128H, VAL152E, VAL38H, VAL70H, VAL71H, VAL84E, VAL94H
• F-R: ALA48F, ALA57F, ALA57R, ALA61R, ALA99F, ARG38F, ARG44F, ARG45F, ARG56R, ARG60R, ARG62R, ARG72R, ARG86F, ARG91F, ASN52F, ASN63F, ASP21R, ASP24R, ASP41F, ASP71R, GLN46F, GLU19R, GLU40F, GLU5F, GLU98F, GLY36R, GLY43F, HIS55F, HIS58F, HIS73R, ILE20R, ILE25R, ILE51F, ILE85F, LEU28R, LEU47F, LEU54F, LEU61F, LEU64R, LEU66R, LEU67R, LYS23R, LYS53F, LYS56F, LYS59R, LYS93F, MET62F, MET88F, MET90F, MET9F, PHE8F, PRO50F, PRO68R, SER100F, SER65R, SER87F, THR70R, TRP42F, TYR22R, TYR49F, TYR59F, TYR63R, TYR69R, VAL7F, VAL89F, VAL96F
• G-I: ALA38G, ALA43I, ARG108I, ARG11I, ARG121I, ARG40I, ARG44I, ARG48I, ARG79I, ARG9G, ASP14G, GLN49I, GLU39G, GLU41I, GLY18G, ILE41G, ILE71I, LEU12G, LYS10G, LYS12I, LYS16G, LYS34G, LYS35G, MET30G, MET45I, PHE17G, PRO13G, PRO15G, SER36G, SER40G, SER72I, THR37G, THR42I, TYR43G, VAL26G, VAL42G, VAL46I, VAL47I
• G-K: ALA144G, ALA146G, ALA149G, ALA151G, ALA61K, ALA62K, ARG52K, ARG55K, ARG97K, ASN147G, GLN63K, GLN85G, GLU145G, GLU93K, LYS148G, MET143G, PHE150G, PHE51K, PHE60K, PRO59K, PRO87G, PRO90K, SER54K, SER82G, SER94K, THR58K, THR83G, TYR84G, VAL64K, VAL74G
• H-L: ARG79H, ASN4L, GLN5L, GLY81H, LEU82H, PRO80H, THR2L, VAL3L
• H-Q: ARG79H, ARG83H, GLY34Q, GLY81H, ILE84H, LEU82H, LYS29Q, LYS35Q, PHE36Q, TYR33Q, TYR85H
• I-J: ALA61J, ARG112I, ARG129I, ARG48J, ARG62J, ASP60J, ASP63J, GLN64J, GLU66J, GLY116I, LEU117I, LYS113I, LYS114I, LYS59J, PHE49J, THR50J, TYR65J, VAL115I, VAL51J
• I-N: ALA107I, ALA98N, ARG108I, ARG112I, GLN109I, GLU111I, LYS113I, LYS114I, LYS97N, SER99N, TRP100N, VAL110I, VAL115I
• J-N: ALA12J, ALA61J, ALA87N, ALA98N, ARG45J, ARG48J, ARG62J, ARG68J, ARG68N, ARG80N, ARG84N, ASN58J, ASP14J, ASP63J, GLN64J, GLU47J, GLU66J, GLU85N, GLY71N, GLY94N, HIS56J, ILE53J, ILE67J, ILE81N, ILE92N, LEU52J, LEU73N, LEU95N, LYS59J, LYS75N, LYS96N, LYS97N, MET88N, PHE13J, PHE49J, PHE72N, PHE76N, PRO55J, PRO93N, SER54J, SER79N, SER99N, THR50J, THR69J, TRP100N, TYR65J, VAL51J, VAL57J, VAL83N
• K-R: ARG62R, ARG72R, ASN118K, ASP111K, ASP71R, GLY36R, HIS117K, HIS73R, ILE115K, PRO114K, PRO116K, PRO68R, THR113K, THR70R, TYR63R, TYR69R, VAL112K
• K-U: ALA101K, ALA102K, ALA14U, ALA25U, ALA29U, ALA98K, ARG105K, ARG121K, ARG126K, ARG127K, ARG16U, ARG17U, ARG20U, ARG32U, ARG33U, ARG34U, ARG6U, ARG92K, ARG97K, ASN100K, ASN108K, ASN118K, ASN8U, ASP111K, ASP12U, CYS120K, GLU23U, GLU30U, GLU35U, GLU7U, GLU82K, GLU93K, GLU9U, GLY103K, GLY119K, GLY26U, GLY87K, GLY89K, HIS117K, HIS23K, ILE106K, ILE109K, ILE115K, ILE3U, ILE96K, LEU15U, LEU28U, LEU81K, LEU99K, LYS124K, LYS125K, LYS19U, LYS24U, LYS4U, LYS86K, MET84K, PHE104K, PHE11U, PHE18U, PHE26K, PHE36U, PRO10U, PRO114K, PRO116K, PRO122K, PRO123K, PRO88K, SER94K, THR107K, THR110K, THR113K, THR95K, VAL112K, VAL13U, VAL27U, VAL31U, VAL5U, VAL83K, VAL85K
• L-Q: ALA12L, ARG11L, ARG8L, ASN4L, GLN5L, GLY34Q, HIS30Q, ILE32Q, ILE37Q, LEU6L, LYS35Q, LYS9L, PHE36Q, PRO10L, THR2L, TYR33Q, VAL3L, VAL7L
• M-S: ALA74S, ARG100M, ARG2S, ARG35S, ARG77S, ARG78M, ARG80S, ARG86M, ARG89M, ARG91M, ARG92M, ARG97M, ASP81M, CYS84M, GLN99M, GLU64S, GLU72S, GLY67S, GLY71S, GLY83M, GLY87M, GLY98M, HIS68S, ILE39S, LEU70S, LEU79M, LEU82M, LEU88M, LEU94M, LYS102M, LYS69S, MET65S, MET80M, PHE60S, PHE73S, PRO75S, SER75M, THR101M, THR103M, THR76S, THR78S, TYR79S, TYR85M, VAL59S, VAL96M
• N-S: ALA28N, ALA35N, ARG23N, ARG35S, ARG36S, ARG40N, ARG52N, ARG58N, ASN34N, ASN42N, ASN42S, ASP11S, ASP32N, ASP37N, ASP39N, ASP63S, GLN48N, GLU19S, GLU23S, GLU38N, GLU64S, GLY7S, HIS13S, ILE10S, ILE29N, ILE44S, LEU12S, LEU14S, LEU15S, LEU45N, LEU47N, LEU4S, LEU50N, LYS16S, LYS27N, LYS46N, LYS5S, LYS6S, MET43S, PHE40S, PHE9S, PRO41S, PRO51N, PRO8S, SER31N, SER34S, SER36N, SER57N, THR49N, TRP33S, TRP41N, VAL22S, VAL33N, VAL66S
• Q-T: ARG64Q, ARG73T
• R-U: ARG42R, ARG72R, ASP71R, CYS22U, HIS73R, ILE3U, LEU28U, LYS37R, LYS45U, LYS48U, LYS4U, THR70R, VAL5U