3K8Z

crystal structure of gudb1 a decryptified secondary glutamate dehydrogenase from b. subtilis

• Total interactions analyzed: 15
• Total true interactions: 12
• Strongest Interaction:
  • Chains: A-C
  • Int. Res.: 115
  • Norm. En. per Res.: -3.3118
• Hub Node: A(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-56.9873	64.5566	-156.07	-148.5007	77	10	1	6012	14	51	40
A-C	-93.9024	-20.4842	-266.471	-380.8576	115	25	7	12263	1	34	42
A-E	-48.1501	-19.844	-226.752	-294.7461	98	12	7	9061	1	24	25
A-F	-33.1718	-23.578	-219.181	-275.9308	100	11	6	9131	1	21	20
B-C	-40.0754	-20.3896	-232.309	-292.7739	89	13	8	9200	1	22	21
B-D	-37.136	-20.6643	-222.614	-280.4143	97	12	6	9135	1	23	25
B-E	-44.5839	-16.7322	-208.4	-269.716	114	21	6	10895	0	31	38
C-D	-19.4109	-22.9342	-216.324	-258.6691	100	11	6	8874	1	21	20
C-F	-27.6748	69.4428	-158.596	-116.828	78	9	1	6170	12	54	40
D-E	-57.7482	-0.3115	-164.08	-222.1397	77	10	1	6161	14	52	40
D-F	-96.327	-1.1903	-269.458	-366.9753	115	25	7	12505	1	33	43
E-F	-23.9678	-20.3307	-240.781	-285.0795	90	11	8	9354	1	22	22

Interface residues

• A-B: ALA140A, ALA140B, ARG128A, ARG128B, ARG132A, ARG132B, ARG135A, ARG135B, ARG139A, ARG139B, ARG172A, ARG172B, ARG56A, ARG56B, ASN177B, ASP168A, ASP168B, ASP174A, ASP174B, ASP58A, ASP58B, ASP59A, ASP59B, GLN143A, GLN143B, GLN161A, GLN161B, GLU129A, GLU129B, GLU131A, GLU131B, GLU169A, GLU169B, GLU175A, GLU175B, GLY136A, GLY136B, GLY60A, GLY60B, ILE141A, ILE141B, ILE144A, ILE144B, ILE173A, ILE173B, ILE53A, ILE53B, LYS149A, LYS149B, LYS52A, LYS52B, MET57A, MET57B, PHE127A, PHE127B, PHE176A, PHE176B, PRO54A, PRO54B, SER142A, SER142B, SER171A, SER171B, SER61A, SER61B, TRP165A, TRP165B, TYR170A, TYR170B, VAL138A, VAL138B, VAL145A, VAL145B, VAL55A, VAL55B, VAL62A, VAL62B
• A-C: ALA140A, ALA140C, ALA70A, ALA70C, ARG139A, ARG139C, ARG418A, ARG418C, ARG420A, ARG420C, ARG47A, ARG47C, ARG56A, ARG56C, ARG69A, ARG69C, ASN72A, ASN72C, ASP150A, ASP150C, GLN143A, GLN143C, GLN22A, GLN22C, GLU36A, GLU36C, GLU37A, GLU37C, GLU40A, GLU40C, GLU44A, GLU44C, GLU90A, GLU90C, GLY136C, GLY146C, GLY421A, GLY421C, GLY60A, GLY60C, GLY67A, GLY67C, HIS71A, HIS71C, ILE141A, ILE141C, ILE144A, ILE144C, ILE423A, ILE423C, ILE53A, ILE53C, ILE64A, ILE64C, LEU18A, LEU41A, LEU41C, LEU42A, LEU42C, LEU48A, LEU48C, LEU49A, LEU49C, LYS149A, LYS149C, LYS43A, LYS43C, LYS52A, LYS52C, LYS63A, LYS63C, LYS94A, LYS94C, MET46A, MET46C, MET57A, MET57C, PHE419A, PHE419C, PRO35A, PRO35C, PRO45A, PRO45C, PRO54A, PRO54C, SER142A, SER142C, SER417A, SER417C, SER61A, SER61C, SER74A, THR148C, THR50A, THR50C, THR66A, THR66C, TRP422A, TRP422C, TYR170C, TYR39A, TYR39C, TYR68A, TYR68C, VAL138C, VAL145A, VAL145C, VAL38A, VAL38C, VAL51A, VAL51C, VAL55A, VAL55C, VAL62A, VAL62C
• A-E: ALA164A, ALA414E, ALA416E, ARG135A, ARG172A, ARG411E, ARG418E, ARG420E, ARG47E, ASN159A, ASN177A, ASN364A, ASN364E, ASN365A, ASN365E, ASP108E, ASP150E, ASP168A, ASP174A, ASP73E, GLN143E, GLN161A, GLN363A, GLN363E, GLN366A, GLN366E, GLU131A, GLU169A, GLU175A, GLU372A, GLU373A, GLU374A, GLU377E, GLU415E, GLY112E, GLY146E, GLY190A, GLY191A, GLY367A, GLY367E, GLY421E, GLY76E, HIS193A, ILE144E, ILE162A, ILE173A, LEU109E, LEU187A, LEU189A, LEU379E, LYS149E, LYS185A, LYS378E, LYS381E, LYS385E, LYS412E, MET163A, MET166A, MET167A, MET382E, MET413E, MET46E, PHE127A, PHE176A, PHE359E, PHE368A, PHE368E, PHE419E, PRO110E, PRO147A, PRO147E, PRO179A, PRO186A, PRO77E, SER160A, SER171A, SER178A, SER371A, SER417E, SER74E, THR148E, THR355E, THR78E, TRP165A, TRP361E, TRP370A, TRP370E, TRP422E, TYR111E, TYR170A, TYR34E, TYR358E, TYR369A, VAL145E, VAL188A, VAL362A, VAL362E, VAL75E
• A-F: ALA164F, ALA414A, ALA416A, ARG135F, ARG172F, ARG411A, ARG418A, ARG420A, ARG47A, ASN159F, ASN177F, ASN364A, ASN364F, ASN365A, ASN365F, ASP108A, ASP150A, ASP168F, ASP174F, ASP73A, GLN143A, GLN161F, GLN363A, GLN363F, GLN366A, GLN366F, GLU131F, GLU169F, GLU175F, GLU372F, GLU373F, GLU374A, GLU374F, GLU377A, GLU415A, GLY112A, GLY146A, GLY190F, GLY191F, GLY367A, GLY367F, GLY421A, GLY76A, HIS193F, ILE144A, ILE162F, ILE173F, ILE423A, LEU109A, LEU187F, LEU189F, LEU379A, LYS149A, LYS185F, LYS378A, LYS381A, LYS385A, LYS412A, MET163F, MET166F, MET167F, MET382A, MET413A, MET46A, PHE127F, PHE176F, PHE359A, PHE368A, PHE368F, PHE419A, PRO110A, PRO147A, PRO147F, PRO179F, PRO186F, PRO77A, SER160F, SER171F, SER178F, SER371F, SER417A, SER74A, THR148A, THR355A, THR78A, TRP165F, TRP361A, TRP370A, TRP370F, TRP422A, TYR111A, TYR170F, TYR34A, TYR358A, TYR369F, VAL145A, VAL188F, VAL362A, VAL362F, VAL75A
• B-C: ALA164B, ALA414C, ALA416C, ARG135B, ARG172B, ARG411C, ARG418C, ARG420C, ARG47C, ASN159B, ASN177B, ASN364B, ASN364C, ASN365B, ASN365C, ASP108C, ASP150C, ASP168B, ASP174B, ASP73C, GLN143C, GLN161B, GLN363B, GLN363C, GLN366B, GLN366C, GLU131B, GLU169B, GLU175B, GLU374B, GLU415C, GLY112C, GLY146C, GLY190B, GLY367B, GLY367C, GLY421C, GLY76C, HIS193B, ILE144C, ILE162B, ILE423C, LEU109C, LEU187B, LEU189B, LYS149C, LYS185B, LYS378C, LYS381C, LYS385C, LYS412C, MET163B, MET166B, MET167B, MET382C, MET413C, MET46C, PHE127B, PHE176B, PHE359C, PHE368B, PHE368C, PHE419C, PRO110C, PRO147C, PRO179B, PRO186B, PRO77C, SER160B, SER171B, SER178B, SER371B, SER417C, SER74C, THR148C, THR78C, TRP165B, TRP361C, TRP370B, TRP370C, TRP422C, TYR111C, TYR170B, TYR358C, TYR369B, VAL188B, VAL362B, VAL362C, VAL75C
• B-D: ALA164D, ALA414B, ALA416B, ARG135D, ARG172D, ARG411B, ARG418B, ARG420B, ARG47B, ASN159D, ASN177D, ASN364D, ASN365B, ASN365D, ASP108B, ASP150B, ASP168D, ASP174D, ASP73B, GLN143B, GLN161D, GLN363B, GLN363D, GLN366B, GLN366D, GLU131D, GLU169D, GLU175D, GLU372D, GLU373D, GLU374D, GLU377B, GLU415B, GLY112B, GLY146B, GLY190D, GLY191D, GLY367B, GLY367D, GLY421B, GLY76B, HIS193D, ILE144B, ILE162D, ILE173D, ILE423B, LEU109B, LEU187D, LEU189D, LEU379B, LYS149B, LYS185D, LYS378B, LYS381B, LYS385B, LYS412B, MET163D, MET166D, MET167D, MET382B, MET413B, MET46B, PHE127D, PHE176D, PHE359B, PHE368B, PHE368D, PHE419B, PRO110B, PRO147B, PRO179D, PRO186D, PRO77B, SER160D, SER171D, SER178D, SER371D, SER417B, SER74B, THR148B, THR355B, THR78B, TRP165D, TRP361B, TRP370B, TRP370D, TRP422B, TYR111B, TYR170D, TYR34B, TYR358B, TYR369D, VAL145B, VAL188D, VAL362B, VAL362D, VAL75B
• B-E: ALA140B, ALA140E, ALA70B, ALA70E, ARG139B, ARG139E, ARG418B, ARG418E, ARG420B, ARG420E, ARG47B, ARG47E, ARG56B, ARG56E, ARG69B, ARG69E, ASN72B, ASN72E, ASP150B, ASP150E, GLN143B, GLN143E, GLN22B, GLN22E, GLU37B, GLU37E, GLU40B, GLU40E, GLU44B, GLU44E, GLU90B, GLU90E, GLY136B, GLY136E, GLY146B, GLY146E, GLY421B, GLY421E, GLY60B, GLY60E, GLY67B, GLY67E, HIS71B, HIS71E, ILE141B, ILE141E, ILE144B, ILE144E, ILE423B, ILE423E, ILE53B, ILE53E, ILE64B, ILE64E, LEU18B, LEU41B, LEU41E, LEU42B, LEU42E, LEU48B, LEU48E, LEU49B, LEU49E, LYS149B, LYS149E, LYS43B, LYS43E, LYS52B, LYS52E, LYS63B, LYS63E, LYS94B, LYS94E, MET46B, MET46E, PHE419B, PHE419E, PRO35B, PRO45B, PRO45E, PRO54B, PRO54E, SER142B, SER142E, SER417B, SER417E, SER61B, SER61E, SER74E, THR148B, THR148E, THR50B, THR50E, THR66B, THR66E, TRP422B, TRP422E, TYR170E, TYR39B, TYR39E, TYR68B, TYR68E, VAL138B, VAL138E, VAL145B, VAL145E, VAL38B, VAL38E, VAL51B, VAL51E, VAL55B, VAL55E, VAL62B, VAL62E
• C-D: ALA164C, ALA414D, ALA416D, ARG135C, ARG172C, ARG411D, ARG418D, ARG420D, ARG47D, ASN159C, ASN177C, ASN364C, ASN364D, ASN365C, ASN365D, ASP108D, ASP150D, ASP168C, ASP174C, ASP73D, GLN143D, GLN161C, GLN363C, GLN363D, GLN366C, GLN366D, GLU131C, GLU169C, GLU175C, GLU372C, GLU373C, GLU374C, GLU374D, GLU377D, GLU415D, GLY112D, GLY146D, GLY190C, GLY191C, GLY367C, GLY367D, GLY421D, GLY76D, HIS193C, ILE144D, ILE162C, ILE173C, ILE423D, LEU109D, LEU187C, LEU189C, LEU379D, LYS149D, LYS185C, LYS378D, LYS381D, LYS385D, LYS412D, MET163C, MET166C, MET167C, MET382D, MET413D, MET46D, PHE127C, PHE176C, PHE359D, PHE368C, PHE368D, PHE419D, PRO110D, PRO147C, PRO147D, PRO179C, PRO186C, PRO77D, SER160C, SER171C, SER178C, SER371C, SER417D, SER74D, THR148D, THR355D, THR78D, TRP165C, TRP361D, TRP370C, TRP370D, TRP422D, TYR111D, TYR170C, TYR34D, TYR358D, TYR369C, VAL145D, VAL188C, VAL362C, VAL362D, VAL75D
• C-F: ALA140C, ALA140F, ARG128C, ARG128F, ARG132C, ARG132F, ARG135C, ARG135F, ARG139C, ARG139F, ARG172C, ARG172F, ARG56C, ARG56F, ASP168C, ASP168F, ASP174C, ASP174F, ASP58C, ASP58F, ASP59C, ASP59F, GLN143C, GLN143F, GLN161C, GLN161F, GLU129C, GLU129F, GLU131C, GLU131F, GLU169C, GLU169F, GLU175C, GLU175F, GLY136C, GLY136F, GLY60C, GLY60F, ILE141C, ILE141F, ILE144C, ILE144F, ILE173C, ILE173F, ILE53C, ILE53F, LYS149C, LYS149F, LYS52C, LYS52F, MET57C, MET57F, PHE127C, PHE127F, PHE176C, PHE176F, PRO54C, PRO54F, SER142C, SER142F, SER171C, SER171F, SER61C, SER61F, TRP165C, TRP165F, TYR137C, TYR137F, TYR170C, TYR170F, VAL138C, VAL138F, VAL145C, VAL145F, VAL55C, VAL55F, VAL62C, VAL62F
• D-E: ALA140D, ALA140E, ARG128D, ARG128E, ARG132D, ARG132E, ARG135D, ARG135E, ARG139D, ARG139E, ARG172D, ARG172E, ARG56D, ARG56E, ASN177E, ASP168D, ASP168E, ASP174D, ASP174E, ASP58D, ASP58E, ASP59D, ASP59E, GLN143D, GLN143E, GLN161D, GLN161E, GLU129D, GLU129E, GLU131D, GLU131E, GLU169D, GLU169E, GLU175D, GLU175E, GLY136D, GLY136E, GLY60D, GLY60E, ILE141D, ILE141E, ILE144D, ILE144E, ILE173D, ILE173E, ILE53D, ILE53E, LYS149D, LYS149E, LYS52D, LYS52E, MET57D, MET57E, PHE127D, PHE127E, PHE176D, PHE176E, PRO54D, PRO54E, SER142D, SER142E, SER171D, SER171E, SER61D, SER61E, TRP165D, TRP165E, TYR170D, TYR170E, VAL138D, VAL138E, VAL145D, VAL145E, VAL55D, VAL55E, VAL62D, VAL62E
• D-F: ALA140D, ALA140F, ALA70D, ALA70F, ARG139D, ARG139F, ARG418D, ARG418F, ARG420D, ARG420F, ARG47D, ARG47F, ARG56D, ARG56F, ARG69D, ARG69F, ASN72D, ASN72F, ASP150D, ASP150F, GLN143D, GLN143F, GLN22D, GLN22F, GLU36D, GLU36F, GLU37D, GLU37F, GLU40D, GLU40F, GLU44D, GLU44F, GLU90D, GLU90F, GLY136F, GLY146F, GLY421D, GLY421F, GLY60D, GLY60F, GLY67D, GLY67F, HIS71D, HIS71F, ILE141D, ILE141F, ILE144D, ILE144F, ILE423D, ILE423F, ILE53D, ILE53F, ILE64D, ILE64F, LEU18D, LEU41D, LEU41F, LEU42D, LEU42F, LEU48D, LEU48F, LEU49D, LEU49F, LYS149D, LYS149F, LYS43D, LYS43F, LYS52D, LYS52F, LYS63D, LYS63F, LYS94D, LYS94F, MET46D, MET46F, MET57D, PHE419D, PHE419F, PHE65D, PRO35D, PRO35F, PRO45D, PRO45F, PRO54D, PRO54F, SER142D, SER142F, SER417D, SER417F, SER61D, SER61F, SER74D, SER74F, THR148F, THR50D, THR50F, THR66D, THR66F, TRP422D, TRP422F, TYR39D, TYR39F, TYR68D, TYR68F, VAL138F, VAL145D, VAL145F, VAL38D, VAL38F, VAL51D, VAL51F, VAL55D, VAL55F, VAL62D, VAL62F
• E-F: ALA164E, ALA414F, ALA416F, ARG135E, ARG172E, ARG411F, ARG418F, ARG420F, ARG47F, ASN159E, ASN177E, ASN364E, ASN364F, ASN365E, ASN365F, ASP108F, ASP150F, ASP168E, ASP174E, ASP73F, GLN143F, GLN161E, GLN363E, GLN363F, GLN366E, GLN366F, GLU131E, GLU169E, GLU175E, GLU374E, GLU415F, GLY112F, GLY146F, GLY190E, GLY367E, GLY367F, GLY421F, GLY76F, HIS193E, ILE144F, ILE162E, ILE423F, LEU109F, LEU187E, LEU189E, LYS149F, LYS185E, LYS378F, LYS381F, LYS385F, LYS412F, MET163E, MET166E, MET167E, MET382F, MET413F, MET46F, PHE127E, PHE176E, PHE359F, PHE368E, PHE368F, PHE419F, PRO110F, PRO147F, PRO179E, PRO186E, PRO77F, SER160E, SER171E, SER178E, SER371E, SER417F, SER74F, THR148F, THR78F, TRP165E, TRP361F, TRP370E, TRP370F, TRP422F, TYR111F, TYR170E, TYR34F, TYR358F, TYR369E, VAL188E, VAL362E, VAL362F, VAL75F