3K32

the crystal structure of predicted subunit of trna methyltransferase from methanocaldococcus jannaschii dsm

• Total interactions analyzed: 15
• Total true interactions: 13
• Strongest Interaction:
  • Chains: D-E
  • Int. Res.: 59
  • Norm. En. per Res.: -4.1309
• Hub Node: A(5)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-31.4914	-0.6416	-256.821	-288.954	108	10	5	12200	7	23	24
A-C	-6.9772	-6.6829	-35.8794	-49.5394	20	3	0	1359	1	19	18
A-D	0.0	0.0	-0.1902	-0.1902	2	0	0	62	0	0	1
A-E	-3.567	-3.1819	-25.3455	-32.0944	26	0	0	953	0	6	7
A-F	-20.7654	-63.0488	-126.239	-210.0532	58	15	0	4938	3	49	58
B-C	0.0	0.0	-1.9332	-1.9332	8	0	0	130	0	0	1
B-D	-4.3964	-3.0707	-35.7422	-43.2092	22	5	0	1349	1	20	19
B-E	0.0	0.0	-0.2674	-0.2674	17	0	0	92	0	13	10
C-D	-56.1839	-2.7608	-265.56	-324.5047	109	14	6	12173	6	24	22
C-F	0.0	0.0	-0.2948	-0.2948	11	0	0	60	0	11	12
D-E	-45.329	-73.5674	-124.824	-243.7205	59	9	0	4995	7	42	57
D-F	0.0	-2.7153	-21.5846	-24.2999	23	1	0	862	0	5	6
E-F	-51.2413	10.5845	-263.952	-304.6088	110	15	4	12019	9	23	26

Interface residues

• A-B: ALA103A, ALA103B, ARG107A, ARG107B, ARG108A, ARG108B, ARG111A, ARG111B, ARG126B, ARG144A, ARG144B, ASN128A, ASN128B, ASN29B, ASP109A, ASP109B, ASP110A, ASP110B, ASP5A, GLN121A, GLN121B, GLN130A, GLN130B, GLU124A, GLU124B, GLU149A, GLU149B, GLY137A, GLY137B, GLY139A, GLY139B, GLY27A, GLY27B, HIS145A, HIS145B, ILE101A, ILE101B, ILE120A, ILE120B, ILE129A, ILE129B, ILE132A, ILE132B, ILE200A, ILE200B, ILE22A, ILE22B, LEU102A, LEU102B, LEU115A, LEU115B, LEU123A, LEU123B, LEU135A, LEU135B, LEU143A, LEU143B, LEU146A, LEU146B, LEU18A, LEU18B, LEU23A, LEU23B, LEU26A, LEU26B, LEU3A, LEU3B, LYS114A, LYS114B, LYS127B, LYS141A, LYS141B, LYS198A, LYS198B, LYS24A, LYS24B, LYS25A, LYS25B, PHE138A, PHE138B, PHE150A, PHE150B, PRO134A, PRO134B, SER116A, SER116B, SER118A, SER122A, SER19A, SER19B, THR106A, THR106B, THR133A, THR133B, THR142A, THR142B, TYR117A, TYR117B, TYR131A, TYR131B, TYR140A, TYR140B, TYR28A, TYR28B, VAL21A, VAL21B, VAL6A, VAL6B
• A-C: ALA96C, ARG126C, ARG144A, ASN128C, ASP97C, GLU124C, GLU155A, GLU93C, GLU98C, HIS145A, ILE129C, LEU123C, LYS127C, LYS141A, LYS14A, LYS189A, SER122C, SER148A, THR142A, TYR140A
• A-D: LYS141A, LYS141D
• A-E: ARG111A, ARG126E, ASN128E, GLN121E, GLN130E, GLN85A, GLU119A, GLU119E, GLU124E, GLU76A, GLY81A, HIS77A, ILE120E, ILE129E, LYS114A, LYS78A, LYS89A, PRO80A, PRO82A, SER116A, SER116E, SER118E, SER122E, TYR117E, TYR79A, VAL112A
• A-F: ARG107F, ARG108F, ARG111F, ARG144F, ARG171A, ARG177A, ASP109F, ASP110F, ASP15F, ASP72A, GLN190A, GLN190F, GLU155A, GLU176A, GLU179A, GLU182A, GLU182F, GLU187A, GLU187F, GLU76A, GLU76F, GLY139F, GLY178A, GLY81F, HIS188F, HIS77A, HIS77F, ILE156A, ILE74A, ILE75A, LEU143F, LEU174A, LYS141F, LYS14F, LYS157A, LYS157F, LYS175A, LYS183A, LYS183F, LYS189A, LYS189F, LYS78A, LYS78F, PHE185A, PHE185F, PRO181A, PRO186A, PRO186F, PRO80F, PRO82A, PRO82F, SER180A, TYR140F, TYR184A, TYR184F, TYR79A, TYR79F, VAL112F
• B-C: ASN128B, ASN128C, GLN130B, GLN130C, ILE101B, ILE101C, ILE129B, ILE129C
• B-D: ALA96B, ARG126B, ARG144D, ASN128B, ASP97B, GLU124B, GLU93B, GLU98B, HIS145D, ILE129B, LEU123B, LEU153D, LYS127B, LYS141D, LYS14D, LYS189D, LYS197D, SER122B, SER148D, THR142D, THR191D, TYR140D
• B-E: ASP72E, GLU119B, GLU119E, GLU76E, HIS77B, HIS77E, ILE75E, LYS65E, LYS69B, LYS69E, LYS89B, LYS89E, SER118B, SER118E, SER122B, TYR117B, TYR86B
• C-D: ALA103C, ALA103D, ARG107C, ARG107D, ARG108C, ARG108D, ARG111C, ARG111D, ARG126D, ARG144C, ARG144D, ASN128C, ASN128D, ASN29C, ASP109C, ASP109D, ASP110C, ASP110D, ASP5D, GLN121C, GLN121D, GLN130C, GLN130D, GLU124C, GLU124D, GLU149C, GLU149D, GLU199D, GLY137C, GLY137D, GLY139C, GLY139D, GLY27C, GLY27D, HIS145C, HIS145D, ILE101C, ILE101D, ILE120C, ILE120D, ILE129C, ILE129D, ILE132C, ILE132D, ILE200D, ILE22C, ILE22D, LEU102C, LEU102D, LEU115C, LEU115D, LEU123C, LEU123D, LEU135C, LEU135D, LEU143C, LEU143D, LEU146C, LEU146D, LEU18C, LEU18D, LEU23C, LEU23D, LEU26C, LEU26D, LEU3C, LYS114C, LYS114D, LYS127C, LYS127D, LYS141C, LYS141D, LYS198D, LYS24C, LYS24D, LYS25C, LYS25D, PHE138C, PHE138D, PHE150C, PHE150D, PRO134C, PRO134D, SER100C, SER100D, SER116C, SER116D, SER118C, SER122D, SER19C, SER19D, THR106C, THR106D, THR133C, THR133D, THR142C, THR142D, TYR117C, TYR117D, TYR131C, TYR131D, TYR140C, TYR140D, TYR28C, TYR28D, VAL21C, VAL21D, VAL6C, VAL6D
• C-F: ASP72F, GLU119F, GLU76C, GLU76F, HIS77C, LYS69C, LYS69F, SER118C, SER118F, TYR117C, TYR86C
• D-E: ARG107E, ARG108E, ARG111E, ARG144E, ARG171D, ARG177D, ASP109E, ASP110E, ASP15E, ASP165E, ASP72D, GLN190D, GLN190E, GLU155D, GLU155E, GLU167E, GLU179D, GLU182D, GLU182E, GLU187D, GLU187E, GLU76D, GLY139E, GLY178D, GLY81E, HIS188D, HIS188E, HIS77D, HIS77E, ILE156D, ILE156E, ILE74D, ILE75D, LEU174D, LYS114E, LYS141E, LYS175D, LYS183D, LYS183E, LYS189D, LYS189E, LYS78D, LYS78E, PHE185D, PHE185E, PRO181D, PRO186D, PRO186E, PRO80E, PRO82D, PRO82E, SER180D, THR191D, TYR140E, TYR184D, TYR184E, TYR79D, TYR79E, VAL112E
• D-F: ARG111D, ARG126F, ASN128F, GLN121F, GLN130F, GLN85D, GLU119F, GLU124F, GLU76D, GLY81D, HIS77D, ILE129F, LYS78D, LYS89D, PRO80D, PRO82D, SER116D, SER116F, SER118F, SER122F, TYR117F, TYR79D, VAL112D
• E-F: ALA103E, ALA103F, ALA147E, ALA147F, ARG107E, ARG107F, ARG108E, ARG108F, ARG111E, ARG111F, ARG144E, ARG144F, ASN128E, ASN128F, ASN29E, ASN29F, ASP109E, ASP109F, ASP110E, ASP110F, ASP5E, ASP5F, GLN121E, GLN121F, GLN130E, GLN130F, GLU124E, GLU124F, GLU149E, GLU149F, GLU199E, GLY137E, GLY137F, GLY139E, GLY139F, GLY27E, GLY27F, HIS145E, HIS145F, ILE101E, ILE101F, ILE120E, ILE120F, ILE129E, ILE129F, ILE132E, ILE132F, ILE200E, ILE200F, ILE22E, ILE22F, LEU102E, LEU102F, LEU115E, LEU115F, LEU123E, LEU123F, LEU135E, LEU135F, LEU143E, LEU143F, LEU146E, LEU146F, LEU18E, LEU18F, LEU23E, LEU23F, LEU26E, LEU26F, LEU3F, LYS114E, LYS114F, LYS141E, LYS141F, LYS198E, LYS198F, LYS24E, LYS24F, LYS25E, LYS25F, PHE138E, PHE138F, PHE150E, PHE150F, PRO134E, PRO134F, SER100E, SER100F, SER116E, SER116F, SER19E, SER19F, THR106E, THR106F, THR133E, THR133F, THR142E, THR142F, TYR117E, TYR117F, TYR131E, TYR131F, TYR140E, TYR140F, TYR28E, TYR28F, VAL21E, VAL21F, VAL6E, VAL6F