3K1F
crystal structure of rna polymerase ii in complex with tfiib
Total interactions analyzed 78
Total true interactions 31
Strongest Interaction Chains A-B
Int. Res. 784
Norm. En. per Res. -4.6324
Hub Node B(11)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -477.3872 -233.1278 -2921.3 -3631.815 784 141 58 113565 34 267 242
A-C -4.0934 21.5581 -68.7877 -51.323 51 2 0 2748 0 17 19
A-D -2.3311 -52.5114 -45.3568 -100.1993 37 1 2 2353 4 12 5
A-E -90.9812 -91.547 -620.24 -802.7683 203 25 14 24279 11 78 62
A-F -58.2439 -43.2386 -576.56 -678.0425 177 21 16 22902 2 59 57
A-G -30.612 -73.5254 -160.947 -265.0845 66 9 5 6119 3 21 17
A-H -42.2404 -17.5553 -451.226 -511.0217 137 29 12 17711 0 33 34
A-I -94.3727 -59.2571 -463.289 -616.9188 134 29 10 17038 6 45 43
A-K -23.1001 -23.7332 -264.966 -311.7993 96 9 8 9959 2 22 17
A-M -79.7806 -13.8516 -456.934 -550.5662 194 30 6 19969 8 34 33
B-C -100.6559 -94.9497 -512.63 -708.2357 167 35 3 18302 7 54 64
B-D -7.4997 1.0781 -54.1976 -60.6193 38 5 1 2392 0 16 19
B-E 0.0 0.0 -24.0376 -24.0376 9 0 0 657 0 2 1
B-F -6.296 -6.3628 -16.2087 -28.8675 25 1 0 685 1 7 8
B-G 0.0 -2.7766 -12.7951 -15.5717 25 0 0 830 0 7 4
B-H 0.0 0.0 -0.2178 -0.2178 2 0 0 35 0 0 0
B-I -23.8895 -36.2375 -305.307 -365.434 135 17 3 13152 1 53 49
B-J -44.9236 -0.7612 -451.207 -496.8918 141 17 7 18456 3 35 35
B-K -11.546 -27.8524 -99.3699 -138.7682 61 7 0 3947 4 16 18
B-L -74.2573 -66.7621 -273.073 -414.0924 112 16 7 11606 8 43 43
B-M -49.851 -26.4995 -291.551 -367.9015 177 14 2 14041 3 42 33
C-H 0.0 -6.8431 -26.6586 -33.5017 20 0 1 1191 0 7 5
C-J -42.1326 -19.2076 -313.049 -374.3892 117 26 9 13408 6 38 28
C-K -34.6056 -29.307 -542.575 -606.4876 154 30 16 23360 9 45 47
C-L -62.2423 -26.5605 -179.105 -267.9078 62 9 9 6243 4 25 16
D-G -80.6053 -18.2687 -675.091 -773.9651 204 21 18 26900 10 55 49
E-F 0.0 -23.7802 -25.3853 -49.1655 20 2 0 1162 1 6 6
F-G -6.0399 -11.4389 -135.573 -153.0518 54 6 1 5316 1 10 12
H-K 0.0 0.0 -61.2495 -61.2495 26 4 0 2292 0 3 4
J-L 0.0 0.0 -6.1141 -6.1141 9 0 0 309 0 0 1
K-L 0.0 5.8281 -0.9641 4.864 5 0 0 128 0 3 2