3JYV

structure of the 40s rrna and proteins and p/e trna for eukaryotic ribosome based on cryo-em map of thermomyces lanuginosus ribosome at 8.9a resolution

• Total interactions analyzed: 171
• Total true interactions: 16
• Strongest Interaction:
  • Chains: L-Q
  • Int. Res.: 10
  • Norm. En. per Res.: -4.3518
• Hub Node: C(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
B-E	0.0	0.0	-0.0003	-0.0003	2	0	0	1	0	0	0
C-E	-2.1508	0.0	-6.5047	-8.6555	16	0	0	375	0	3	8
C-J	-2.5369	-16.1659	-31.3283	-50.0311	28	1	0	1611	1	10	12
C-N	0.0	0.0	-26.2328	-26.2328	34	0	1	1421	0	9	20
D-E	0.0	4.9513	-38.3083	-33.357	23	0	0	1357	0	4	4
E-H	-6.8683	3.9587	-124.341	-127.2506	50	2	0	4319	0	2	4
G-I	-25.1451	12.3856	-151.593	-164.3525	70	6	1	5661	1	15	26
G-K	0.0	0.0	-0.0429	-0.0429	3	0	0	11	0	0	3
H-Q	0.0	0.0	-1.762	-1.762	8	0	0	178	0	0	1
I-R	0.0	16.5305	-7.6944	8.8361	32	12	0	1676	0	11	13
I-T	0.0	0.0	-21.244	-21.244	18	0	0	906	0	2	3
J-N	-4.5972	6.0658	-119.283	-117.8145	38	6	1	4533	0	13	15
L-Q	-6.7485	2.1643	-38.9335	-43.5177	10	1	1	1462	0	0	2
M-S	-36.1334	-11.5231	-177.951	-225.6075	56	7	2	6271	2	13	30
M-T	-7.4615	0.1902	-144.866	-152.1372	46	2	2	5407	1	14	10
N-S	0.0	0.0	-1.5678	-1.5678	7	0	0	242	0	0	5

Interface residues

• B-E: LEU134E, TYR138B
• C-E: ALA149C, ALA92E, ARG116C, ARG91E, ARG95E, GLN94E, GLU120E, GLY93E, LYS119E, LYS148C, LYS151C, MET150C, PHE152C, PHE98E, THR96E, TYR120C
• C-J: ARG40C, ARG9C, ASP113J, GLU109J, GLU115J, GLU38C, GLU47C, GLY111J, ILE86J, LEU11C, LEU26J, LEU63J, LYS61J, LYS7C, LYS88J, LYS8C, MET84J, PRO110J, PRO43C, SER28J, SER6C, THR107J, THR25J, THR27J, THR42C, VAL112J, VAL114J, VAL41C
• C-N: ALA13C, ALA19C, ARG22N, ARG32N, ARG9C, ASN22C, ASP14C, ASP35N, ASP49N, GLU20C, GLU23C, GLY15C, GLY51N, HIS53N, ILE50N, LEU11C, LEU36N, LYS10C, LYS33N, LYS46N, LYS54N, LYS78C, LYS7C, LYS8C, PHE17C, PHE52N, PHE77C, TRP7N, TYR18C, TYR34N, VAL12C, VAL16C, VAL37C, VAL39C
• D-E: ALA172E, ALA56D, ALA98D, ARG174E, ASP195E, ASP94D, GLU64D, GLY175E, GLY177E, ILE178E, LEU60D, LEU93D, LEU97D, LYS185E, LYS90D, LYS91D, PRO173E, PRO182E, SER176E, TYR197E, TYR95D, VAL179E, VAL96D
• E-H: ALA155E, ALA231E, ALA91H, ALA96H, ARG168E, ARG23H, ARG68H, ARG97H, ASN220E, ASN228E, ASN66H, ASN70H, ASN92H, GLN150E, GLN233E, GLN98H, GLU232E, GLY100H, GLY160E, GLY223E, GLY45H, GLY67H, HIS44H, ILE170E, ILE47H, LEU154E, LEU169E, LEU225E, LEU229E, LEU235E, LEU69H, LEU94H, LYS157E, MET41H, PHE224E, PHE99H, PRO171E, PRO227E, PRO234E, PRO95H, THR156E, THR158E, THR159E, THR226E, THR90H, TRP230E, TYR101H, TYR130H, TYR46H, VAL129H
• G-I: ALA108I, ALA173G, ARG112G, ARG114I, ARG122I, ARG143G, ARG143I, ARG166G, ARG167G, ARG45I, ARG65G, ARG92G, ASN169G, ASN44G, ASN95G, ASP113I, ASP145G, ASP161G, GLN170G, GLN63G, GLN66G, GLU42I, GLU91G, HIS116G, HIS74I, ILE40G, ILE43I, ILE68G, ILE90G, LEU108G, LEU165G, LEU44I, LEU58G, LYS106I, LYS107G, LYS107I, LYS115G, LYS132I, LYS140I, LYS14I, LYS47I, MET98G, MET99G, PHE109I, PHE43G, PHE46I, PHE69G, PRO142G, PRO164G, PRO67G, SER111I, SER136I, SER141I, SER163G, SER96G, THR110I, THR115I, THR147G, THR94G, TYR112I, TYR142I, TYR61G, TYR79I, VAL111G, VAL160G, VAL162G, VAL168G, VAL62G, VAL64G, VAL75I
• G-K: ASN224G, LYS92K, SER223G
• H-Q: ASN80H, ASN98Q, LYS124H, PHE79H, PRO77H, TRP89H, TYR100Q, TYR93Q
• I-R: ALA91I, ALA95R, ARG59R, ASN103I, ASN17R, ASP39R, ASP98I, GLN100I, GLN94I, GLU14R, GLU99I, GLY15R, GLY97R, HIS16R, HIS93I, ILE43R, LYS102I, LYS53R, LYS62R, LYS95I, PHE61R, PRO57R, SER60R, THR41R, THR96R, TYR92I, TYR96I, VAL56R, VAL58R, VAL90I, VAL94R, VAL97I
• I-T: ALA10T, ALA11T, ARG63T, ARG7T, ASN32I, ASP8T, GLY33I, LEU140T, LEU38I, PRO35I, PRO41I, SER34I, SER5T, THR37I, VAL39I, VAL4T, VAL6T, VAL9T
• J-N: ALA47N, ARG40N, ARG44N, ARG68J, ARG85J, ASN37N, ASN48N, ASN72J, CYS39N, CYS42N, GLN41N, GLU45N, GLU74J, GLU80J, GLU83J, GLY51N, GLY73J, HIS53N, ILE38N, ILE65J, ILE86J, LEU63J, LYS33N, LYS46N, LYS54N, LYS64J, LYS69J, MET84J, PHE43N, PHE52N, PRO71J, SER66J, THR67J, THR70J, THR78J, THR81J, TYR34N, TYR82J
• L-Q: ARG99Q, ASN28L, ASN98Q, ILE94Q, LYS30L, LYS31L, LYS96Q, PRO95Q, TYR29L, TYR97Q
• M-S: ALA101S, ALA121M, ALA74S, ARG108S, ARG115M, ARG120M, ARG123M, ARG126M, ARG47S, ARG77S, ARG81S, ASN103S, ASN87M, ASN90M, ASN98S, ASP91M, GLN104S, GLN89M, GLU106S, GLU110S, GLY113S, GLY117S, GLY124M, GLY95S, GLY99S, HIS114S, HIS122M, HIS79S, ILE107S, ILE119M, ILE125M, ILE85S, ILE92M, ILE96S, LEU112S, LEU116M, LEU116S, LEU131M, LYS100S, LYS117M, LYS118M, MET111S, MET49S, PHE102S, PHE128M, PRO109S, PRO75S, THR78S, THR93M, TRP129M, TYR115S, TYR97S, VAL105S, VAL76S, VAL93S, VAL94S
• M-T: ALA50M, ALA83M, ALA96T, ARG41M, ARG86T, ASN43T, ASN44M, ASP35T, ASP51M, ASP53M, ASP95T, CYS47M, GLU44T, GLY32T, GLY42T, GLY98T, HIS78M, ILE100T, ILE36T, ILE72M, ILE81M, ILE94T, LEU45M, LEU54M, LYS38T, LYS48M, LYS49M, LYS80M, MET45T, PRO82M, SER40T, SER41T, SER43M, SER97T, SER99T, THR39T, THR77M, TRP84M, TYR33T, TYR42M, TYR79M, VAL29M, VAL34T, VAL37T, VAL46M, VAL52M
• N-S: ARG12N, ARG13N, ARG81S, ASN82S, LYS58S, MET80S, PHE56S