3JSV

crystal structure of mouse nemo cozi in complex with lys63- linked di-ubiquitin

• Total interactions analyzed: 6
• Total true interactions: 6
• Strongest Interaction:
  • Chains: A-C
  • Int. Res.: 50
  • Norm. En. per Res.: -4.2707
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-15.8124	-4.3293	55.4122	35.2705	7	10	0	241	0	1	5
A-C	-14.0278	-59.9757	-139.531	-213.5344	50	10	7	5870	2	14	12
A-D	0.0	3.0667	-26.9637	-23.897	21	1	1	1169	0	5	8
B-C	0.0	0.0	-0.6771	-0.6771	9	0	0	122	0	8	3
B-D	0.0	0.0	-0.8258	-0.8258	12	0	0	92	0	3	10
C-D	-8.913	-54.201	-494.914	-558.028	164	47	44	23583	4	83	69

Interface residues

• A-B: ARG74A, ASP39A, GLN62B, GLY75A, GLY76A, LYS63B, MET1B
• A-C: ALA296C, ALA298C, ALA303C, ALA307C, ALA311C, ALA46A, ARG309C, ARG312C, ARG42A, ARG72A, ARG74A, ASP299C, ASP304C, GLN297C, GLN306C, GLN40A, GLN41A, GLN49A, GLU289C, GLU308C, GLY47A, GLY75A, GLY76A, HIS310C, HIS68A, ILE286C, ILE300C, ILE44A, LEU294C, LEU43A, LEU67A, LEU69A, LEU71A, LEU73A, LEU8A, LYS295C, LYS302C, LYS48A, LYS6A, PHE305C, PHE45A, PRO292C, THR290C, THR66A, THR7A, THR9A, TYR301C, VAL291C, VAL293C, VAL70A
• A-D: ALA298D, ALA303D, ARG309D, ARG312D, ARG72A, ARG74A, ASP299D, ASP304D, GLN306D, GLN40A, GLU308D, GLY75A, LEU294D, LEU71A, LEU73A, LEU8A, LYS295D, LYS302D, PHE305D, TYR301D, VAL291D
• B-C: ALA311C, GLU16B, GLU18B, LEU315C, LYS29B, LYS314C, LYS318C, MET1B, VAL17B
• B-D: ARG312D, ASN25B, ASP21B, GLN323D, GLU18B, GLU24B, GLU320D, GLU327D, LYS319D, SER20B, THR22B, VAL316D
• C-D: ALA263C, ALA263D, ALA266C, ALA266D, ALA269C, ALA269D, ALA281C, ALA281D, ALA296C, ALA296D, ALA298C, ALA298D, ALA303C, ALA303D, ALA307C, ALA307D, ALA311C, ALA311D, ARG257C, ARG257D, ARG309C, ARG309D, ARG312C, ARG312D, ARG331C, ARG331D, ASN334C, ASN334D, ASP255C, ASP275C, ASP275D, ASP299C, ASP299D, ASP304C, ASP304D, GLN252C, GLN258C, GLN258D, GLN259C, GLN259D, GLN261C, GLN261D, GLN262C, GLN262D, GLN271C, GLN271D, GLN283C, GLN283D, GLN297C, GLN297D, GLN306C, GLN306D, GLN323C, GLN323D, GLN325C, GLN325D, GLN328C, GLN328D, GLN330C, GLN330D, GLU264C, GLU264D, GLU265C, GLU265D, GLU272C, GLU272D, GLU279C, GLU279D, GLU280C, GLU280D, GLU282C, GLU282D, GLU289C, GLU289D, GLU308C, GLU308D, GLU313C, GLU313D, GLU317C, GLU317D, GLU320C, GLU320D, GLU324C, GLU324D, GLU327C, GLU327D, GLU332C, GLU332D, HIS284C, HIS284D, HIS310C, HIS310D, ILE274C, ILE274D, ILE286C, ILE286D, ILE300C, ILE300D, LEU253C, LEU256C, LEU256D, LEU260C, LEU260D, LEU267C, LEU267D, LEU273C, LEU273D, LEU277C, LEU277D, LEU294C, LEU294D, LEU315C, LEU315D, LEU322C, LEU322D, LEU326C, LEU326D, LEU329C, LEU329D, LEU336D, LYS270C, LYS270D, LYS276C, LYS276D, LYS278C, LYS278D, LYS285C, LYS285D, LYS295C, LYS295D, LYS302C, LYS302D, LYS314C, LYS314D, LYS318C, LYS318D, LYS319C, LYS319D, LYS335D, LYS337D, MET288C, MET288D, PHE305C, PHE305D, PHE333C, PHE333D, PRO292C, PRO292D, THR290C, THR290D, TYR301C, TYR301D, TYR321C, TYR321D, VAL268C, VAL268D, VAL287C, VAL287D, VAL291C, VAL291D, VAL293C, VAL293D, VAL316C, VAL316D