3J0K
orientation of rna polymerase ii within the human vp16-mediator-pol ii-tfiif assembly
Total interactions analyzed 66
Total true interactions 29
Strongest Interaction Chains A-B
Int. Res. 776
Norm. En. per Res. -4.1891
Hub Node B(10)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -419.8436 -361.358 -2469.51 -3250.7116 776 259 58 110741 23 253 234
A-C -9.7753 -0.2067 -64.0686 -74.0507 51 8 0 2850 0 15 19
A-D 0.0 0.0 -9.4667 -9.4667 19 0 2 594 0 11 4
A-E -50.7146 -76.025 -506.978 -633.7176 209 54 13 23149 7 79 62
A-F -75.5218 -34.3539 -457.621 -567.4968 173 28 14 21155 2 61 54
A-G -15.0624 -59.6073 -120.835 -195.5048 67 11 4 5653 2 23 16
A-H -41.1103 -4.789 -345.006 -390.9054 138 49 12 17150 2 36 35
A-I -47.1216 -23.3543 -349.797 -420.2729 143 24 9 15443 5 46 41
A-K -20.4189 -32.2863 -235.823 -288.5282 90 13 8 9708 1 23 18
B-C -76.564 -89.8947 -447.933 -614.3916 171 29 5 17781 7 58 60
B-D 0.0 0.0 -12.0804 -12.0804 30 0 1 949 0 17 18
B-E 0.0 0.0 -3.0081 -3.0081 7 3 0 376 0 2 2
B-F 0.0 0.0 -10.4154 -10.4154 22 3 0 528 0 4 6
B-G -9.1566 -3.5768 -16.3044 -29.0378 28 2 0 1061 0 6 4
B-H 0.0 0.0 -0.4935 -0.4935 2 0 0 49 0 0 0
B-I -3.5924 -61.0016 -235.414 -300.008 134 29 2 12109 1 46 55
B-J -17.8082 -21.8538 -365.189 -404.851 137 30 6 17477 2 36 37
B-K -7.2486 -26.2912 -71.516 -105.0559 54 5 0 3278 2 16 19
B-L -41.5713 -70.8738 -198.467 -310.912 112 18 8 10357 5 43 45
C-H 0.0 -7.0342 -25.9931 -33.0273 25 0 1 1411 0 8 7
C-J -35.361 -6.8364 -221.099 -263.2963 109 26 9 11920 5 36 23
C-K -34.2997 -25.9874 -458.363 -518.6501 154 34 17 21993 7 47 48
C-L -49.9661 -63.3409 -129.652 -242.959 60 17 9 5968 4 24 16
D-G -42.5975 -0.6568 -493.174 -536.4283 194 54 23 23444 5 54 49
E-F -3.8093 -24.1302 -32.8493 -60.7888 20 0 0 1551 1 6 8
F-G -8.9881 -7.8833 -109.173 -126.0444 52 17 1 5163 1 10 8
H-K 0.0 0.0 -23.9873 -23.9873 28 0 0 1637 0 5 5
J-L 0.0 0.0 -10.6067 -10.6067 10 0 0 554 0 1 1
K-L 0.0 7.7345 -1.9344 5.8001 6 0 0 243 0 3 2