3J01

structure of the ribosome-secye complex in the membrane environment

• Total interactions analyzed: 561
• Total true interactions: 37
• Strongest Interaction:
  • Chains: N-0
  • Int. Res.: 58
  • Norm. En. per Res.: -4.2057
• Hub Node: A(5)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-9.281	-39.5222	-478.043	-526.8461	163	10	19	19899	3	14	19
A-S	0.0	0.0	-0.1057	-0.1057	2	0	0	25	0	0	0
A-T	0.0	27.7528	-58.0931	-30.3403	49	1	0	2620	0	12	15
A-U	0.0	0.0	-27.4138	-27.4138	32	2	1	1288	0	1	4
A-Y	0.0	0.0	-30.0789	-30.0789	21	1	0	1418	0	0	1
B-T	-20.9807	-32.8172	-96.6504	-150.4483	36	2	0	3581	5	16	9
B-Y	-13.664	-20.7905	-55.9978	-90.4523	33	1	0	2402	0	4	4
D-J	0.0	4.0787	-30.0279	-25.9492	10	1	1	1013	0	0	6
D-K	-2.5251	-2.586	-23.1853	-28.2964	21	1	0	892	0	3	7
D-N	0.0	3.6997	-12.2072	-8.5075	16	0	0	679	0	0	12
D-P	-16.9055	-26.3309	-140.692	-183.9284	57	2	4	6593	3	13	13
E-L	-13.2336	-3.0153	-130.708	-146.9569	50	2	4	5198	0	9	9
E-Q	0.0	0.0	-2.8276	-2.8276	10	0	1	330	0	0	3
E-2	0.0	0.0	-0.0284	-0.0284	3	0	0	11	0	0	0
G-I	0.0	0.0	-0.0068	-0.0068	2	0	0	6	0	0	0
G-4	0.0	-16.9367	-14.281	-31.2177	18	0	0	941	1	5	7
H-X	-4.5251	-3.1223	-73.9936	-81.641	40	1	0	3545	1	9	15
J-Q	-4.8171	21.8643	-132.55	-115.5029	50	1	7	5963	0	9	22
J-R	0.0	5.477	-17.3753	-11.8983	17	1	0	1170	0	2	5
K-P	-14.3626	-64.5948	-211.443	-290.4005	73	3	3	7955	6	25	31
L-Q	0.0	0.0	-0.0112	-0.0112	6	0	0	9	0	0	3
L-R	0.0	4.5174	-36.8878	-32.3704	21	1	0	1428	0	0	11
L-3	-15.4196	17.4061	-157.465	-155.4785	54	2	3	6324	0	4	29
M-V	0.0	-8.7452	-69.0259	-77.7711	45	0	4	3360	0	4	11
M-W	0.0	1.2532	-18.2341	-16.9809	18	0	0	1250	0	2	15
M-4	0.0	0.0	-0.7952	-0.7952	5	0	0	108	0	3	2
N-P	0.0	0.0	-0.0003	-0.0003	2	0	0	1	0	0	0
N-S	0.0	-3.4658	-26.1203	-29.5861	19	1	0	984	0	3	2
N-0	-38.0306	3.8757	-209.778	-243.9329	58	5	4	7117	1	25	29
O-W	0.0	-13.0199	-17.3564	-30.3763	24	0	0	1025	1	3	7
Q-R	-3.8373	13.0726	-223.088	-213.8527	102	4	9	9397	1	23	43
Q-0	0.0	0.0	-7.9787	-7.9787	15	0	0	674	0	0	5
S-0	-5.046	3.0218	-108.325	-110.3492	49	0	7	5057	1	14	15
T-Y	-6.2215	18.9466	-153.231	-140.5059	61	1	3	6242	1	11	19
T-2	0.0	0.0	-0.0003	-0.0003	2	0	0	1	0	0	1
W-3	0.0	0.0	-1.9078	-1.9078	6	0	0	198	0	1	2
1-3	0.0	2.1496	-22.4895	-20.3398	25	0	0	1256	0	1	14

Interface residues

• A-B: ALA102B, ALA193A, ALA197A, ALA202A, ALA204A, ALA224A, ALA229A, ALA272A, ALA418A, ALA46A, ALA50A, ALA75B, ALA98B, ALA99B, ARG117B, ARG126B, ARG211A, ARG239A, ARG242A, ARG34A, ARG372A, ARG37B, ARG76B, ARG80B, ARG87B, ASP112B, ASP415A, ASP45A, GLN146A, GLN241A, GLN421A, GLN55A, GLN88B, GLU238A, GLU54A, GLU74B, GLU78B, GLU89B, GLY110B, GLY113B, GLY124B, GLY144A, GLY147A, GLY194A, GLY198A, GLY240A, GLY36A, GLY377A, GLY403A, GLY43A, HIS205A, HIS216A, HIS92B, ILE107B, ILE114B, ILE122B, ILE150A, ILE195A, ILE306A, ILE39A, ILE408A, ILE413A, ILE41A, ILE44A, ILE77A, ILE83B, ILE96B, LEU106B, LEU108B, LEU111B, LEU115B, LEU118B, LEU125B, LEU148A, LEU199A, LEU218A, LEU220A, LEU221A, LEU222A, LEU226A, LEU303A, LEU373A, LEU375A, LEU379A, LEU406A, LEU407A, LEU49A, LEU52A, LEU53A, LEU91B, LEU95B, LYS268A, LYS368A, LYS51A, LYS81B, MET104B, MET145A, MET271A, MET370A, MET414A, MET417A, PHE121B, PHE127B, PHE192A, PHE217A, PHE228A, PHE232A, PHE233A, PHE236A, PHE33A, PHE38A, PHE399A, PHE416A, PHE78A, PRO200A, PRO201A, PRO40A, PRO42A, PRO85B, SER105B, SER120B, SER307A, SER37A, SER405A, THR101B, THR123B, THR231A, THR305A, THR371A, THR374A, THR404A, THR77B, THR86B, THR90B, THR93B, THR94B, TRP109B, TRP84B, TYR365A, VAL100B, VAL103B, VAL116B, VAL119B, VAL149A, VAL196A, VAL219A, VAL223A, VAL225A, VAL227A, VAL230A, VAL234A, VAL235A, VAL237A, VAL269A, VAL369A, VAL376A, VAL409A, VAL410A, VAL412A, VAL48A, VAL79B, VAL82B, VAL97B
• A-S: GLN253A, HIS9S
• A-T: ALA13T, ALA20T, ALA23T, ALA363A, ARG243A, ARG255A, ARG256A, ARG357A, ARG372A, ARG69T, ARG73T, ARG76T, ARG77T, ASN92T, ASP94T, GLN241A, GLN253A, GLN361A, GLN72T, GLN91T, GLU18T, GLU360A, GLY254A, GLY355A, GLY359A, GLY442A, GLY71T, GLY75T, HIS264A, HIS70T, ILE356A, LEU93T, LYS19T, LYS26T, LYS33T, LYS364A, LYS368A, LYS68T, PHE95T, PRO354A, PRO358A, SER17T, SER21T, THR22T, THR362A, TYR365A, VAL16T, VAL257A, VAL353A
• A-U: ALA249A, ALA260A, ALA418A, ALA432A, ALA50U, ARG242A, ARG251A, ASN247A, ASN52U, GLN261A, GLN421A, GLN428A, GLN45U, GLN53U, GLU238A, GLU430A, GLY55U, HIS44U, LEU51U, LYS43U, LYS46U, PRO47U, PRO49U, PRO54U, SER427A, SER431A, THR263A, THR422A, TYR248A, TYR429A, VAL245A, VAL48U
• A-Y: ALA32Y, ALA33Y, ARG239A, ARG242A, ARG243A, GLN241A, GLN31Y, GLN36Y, GLN38Y, GLN39Y, GLY240A, GLY35Y, HIS41Y, ILE244A, LEU37Y, LEU43Y, SER34Y, SER40Y, TYR365A, VAL245A, VAL246A
• B-T: ALA16B, ALA67B, ALA72B, ALA75B, ALA99T, ARG12B, ARG73B, ARG76B, ARG80B, ASN92T, ASP94T, GLN91T, GLU100T, GLU15B, GLU52T, GLU54T, GLU74B, GLU78B, GLU89T, GLY65B, GLY90T, GLY97T, GLY98T, LEU14B, LEU87T, LEU93T, LYS64B, LYS66B, LYS81B, PHE51T, PHE71B, PHE95T, THR77B, VAL16T, VAL53T, VAL96T
• B-Y: ALA32Y, ARG12B, ARG23Y, ARG29Y, ARG76B, ARG80B, ASN20Y, ASN27Y, GLN25Y, GLN31Y, GLN36Y, GLN38Y, GLN39Y, GLN45Y, GLN88B, GLU15B, GLU24Y, GLY13B, GLY35Y, LEU14B, LEU19Y, LEU22Y, LEU28Y, LEU37Y, LEU42Y, LEU43Y, LYS81B, MET30Y, PHE26Y, PRO85B, SER34Y, TRP84B, VAL46Y
• D-J: GLY158D, GLY79J, GLY82J, HIS80J, ILE81J, LYS157D, LYS159D, PHE156D, THR78J, VAL155D
• D-K: ARG105K, ARG128D, ARG13D, ARG31K, ARG70K, ARG71K, ASN126D, ASP18D, ASP73K, GLY19D, GLY74K, HIS29K, ILE14D, ILE22D, PHE15D, PRO23D, PRO72K, SER21D, SER75K, THR16D, VAL20D
• D-N: ALA119D, ALA196D, ARG2N, ARG4N, ASN167D, GLY10D, GLY115D, GLY117D, GLY198D, HIS3N, LYS114D, LYS116D, MET165D, MET1N, PHE118D, THR197D
• D-P: ARG13D, ARG179D, ARG184D, ASN185D, ASN2P, ASP181D, ASP18D, GLN11P, GLN14P, GLN6P, GLN74P, GLN9P, GLU10P, GLU17D, GLU28D, GLU8P, GLY10D, GLY19D, GLY53P, HIS55P, HIS76P, ILE14D, ILE27D, ILE3P, ILE4P, LEU186D, LEU187D, LEU188D, LEU54P, LEU7P, LYS13P, LYS37P, LYS5P, LYS7D, LYS8D, MET11D, MET12P, PHE15D, PHE73P, PRO78P, SER1P, SER21D, SER56P, SER77P, THR12D, THR16D, THR197D, THR25D, THR75P, TRP30P, VAL20D, VAL24D, VAL26D, VAL32P, VAL79P, VAL80P, VAL9D
• E-L: ALA182E, ALA26E, ALA9L, ARG114E, ARG117E, ARG21L, ARG2L, ARG33L, ASN24E, ASN4L, ASP116E, ASP184E, GLN115E, GLN30E, GLN94E, GLU10L, GLU111E, GLU25E, HIS29E, ILE108E, ILE181E, LEU109E, LEU112E, LEU118E, LEU180E, LEU27E, LEU3L, LEU6L, LYS13L, LYS185E, MET1L, PHE183E, PHE23E, PHE85E, PRO177E, PRO8L, SER107E, SER110E, SER12L, SER179E, SER7L, THR5L, TYR35E, VAL113E, VAL178E, VAL186E, VAL28E, VAL31E, VAL32E, VAL33E
• E-Q: ALA1Q, ALA45E, ALA87E, ARG2Q, ARG40E, ARG44E, GLN46E, GLY42E, THR43E, VAL83E
• E-2: LYS372, SER55E, THR53E
• G-I: ALA1I, THR170G
• G-4: ALA294, ARG152G, ARG169G, ASP165G, CYS274, GLU154G, GLU166G, GLU304, HIS334, LYS171G, LYS324, LYS344, PRO153G, PRO155G, PRO314, SER284, VAL167G, VAL168G
• H-X: ALA23H, ALA26H, ALA39H, ARG27H, ARG36X, ARG56X, ASN28H, ASN43H, ASP59X, ASP64X, GLN2H, GLN33H, GLU40X, GLY24H, GLY34H, GLY62X, HIS35X, ILE58X, ILE63X, LEU30H, LEU67X, LYS41H, LYS42H, LYS43X, LYS60X, LYS61X, MET1H, MET55X, PHE37X, PHE45X, PHE46H, PRO32H, PRO38H, THR40H, THR65X, TRP38X, VAL21H, VAL31H, VAL37H, VAL57X
• J-Q: ALA42J, ALA62Q, ALA66Q, ALA67Q, ALA68Q, ALA6J, ALA98Q, ARG34J, ARG35J, ARG37J, ARG63Q, ARG69Q, ARG91Q, ASN65Q, ASP101Q, ASP96Q, GLN55Q, GLN58Q, GLN70Q, GLU31J, GLU43J, GLY38J, HIS40J, HIS47J, ILE142J, ILE61Q, ILE64Q, ILE93Q, ILE97Q, LEU59Q, LEU94Q, LYS102Q, LYS2J, LYS39J, LYS41J, LYS53Q, LYS92Q, MET1J, PHE100Q, PHE105Q, PHE4J, PHE56Q, PRO46J, THR30J, THR3J, THR45J, THR5J, TRP60Q, TYR44J, VAL99Q
• J-R: ARG13R, ARG21R, ASP95R, GLN11R, GLN18R, GLN91R, GLU23R, HIS12R, LEU22R, LYS10R, LYS2J, MET1J, PHE4J, SER15R, THR19R, THR3J, VAL20R
• K-P: ALA11K, ALA41P, ALA48P, ALA57P, ALA83K, ARG100P, ARG105K, ARG108K, ARG38P, ARG61P, ARG64K, ARG70K, ARG71P, ARG78K, ASN65P, ASN82K, ASN9K, ASP73K, ASP80K, GLN40P, GLN74P, GLU121K, GLU33P, GLU67P, GLU70P, GLY101K, GLY34P, GLY66P, GLY68K, GLY68P, GLY74K, GLY81K, HIS55P, ILE116K, ILE47P, ILE63P, ILE77K, LEU123K, LYS36P, LYS62P, LYS66K, PHE100K, PHE42P, PHE58P, PHE73P, PHE79K, PRO102K, PRO120K, PRO72K, PRO78P, SER35P, SER56P, SER64P, SER75K, SER77P, THR104K, THR59P, THR65K, THR75P, TRP30P, TYR97P, VAL103K, VAL122K, VAL29P, VAL31P, VAL32P, VAL60P, VAL69K, VAL69P, VAL72P, VAL76K, VAL79P, VAL80P
• L-Q: ARG12Q, ARG18L, GLY22L, ILE23L, PHE35Q, VAL3Q
• L-R: ARG21L, ARG84R, GLN86R, GLY20L, GLY22L, GLY24L, GLY26L, GLY28L, GLY31L, HIS35L, HIS82R, ILE23L, LEU19L, LEU27L, LYS29L, LYS81R, LYS85R, PHE77R, SER25L, THR30L, TYR83R
• L-3: ALA103, ALA263, ALA593, ALA93, ARG123, ARG293, ARG47L, ARG48L, ARG59L, ARG60L, ARG73, ASN273, ASP533, CYS603, GLN54L, GLU51L, GLU76L, GLY49L, GLY523, GLY553, GLY65L, GLY83, HIS233, HIS253, ILE583, LEU283, LEU433, LEU543, LEU563, LEU57L, LEU613, LEU61L, LYS113, LYS143, LYS153, LYS223, LYS243, LYS43, LYS463, LYS513, LYS63L, PHE133, PHE213, PHE50L, PHE64L, PHE66L, PRO56L, PRO62L, THR67L, TYR58L, VAL46L, VAL493, VAL573, VAL63
• M-V: ALA21M, ALA35M, ALA52V, ALA54V, ALA74V, ARG79V, ASP25M, ASP76V, GLN51V, GLN75V, GLN87V, GLN97M, GLU55V, GLY19M, GLY37M, GLY99M, HIS80V, ILE89V, LEU20M, LYS100M, LYS127M, LYS133M, LYS34M, LYS53V, LYS73V, LYS83V, MET136M, MET50V, PHE130M, PHE56V, PRO81V, PRO84V, PRO98M, SER58V, THR128M, THR129M, THR132M, THR134M, THR24M, TYR57V, TYR82V, VAL131M, VAL135M, VAL36M, VAL77V
• M-W: ALA1W, ALA5W, ARG10M, ASN88M, GLU75M, GLY85M, GLY87M, HIS2W, LYS11M, LYS3W, LYS4W, LYS76M, LYS84M, LYS86M, PRO77M, SER8W, THR74M, VAL80M
• M-4: GLU115M, LEU119M, LYS118M, LYS84, SER64
• N-P: ARG4N, SER1P
• N-S: ALA104N, ALA108N, ALA43S, ALA44S, ARG103N, ASN107N, ASN40S, ASP106N, CYS100N, GLY101N, GLY105N, LYS41S, LYS42S, PHE102N, PRO109N, THR37S, THR39S, TYR38S, VAL45S
• N-0: ALA111N, ALA122N, ALA124N, ALA125N, ALA126N, ALA440, ALA550, ARG390, ARG490, ARG510, ARG90N, ARG96N, ASP300, ASP450, CYS100N, GLU114N, GLU120N, GLU123N, GLU127N, GLU32N, GLU350, GLY101N, GLY340, GLY460, GLY500, HIS31N, HIS370, HIS400, HIS410, ILE113N, ILE33N, ILE34N, ILE420, ILE540, ILE97N, LEU380, LEU38N, LEU98N, LYS310, LYS35N, LYS520, LYS560, LYS99N, MET110N, PHE102N, PRO109N, SER119N, SER260, SER330, THR320, THR430, TYR112N, TYR470, TYR480, VAL116N, VAL240, VAL290, VAL530
• O-W: ALA46W, ALA48W, ARG13O, ARG16O, ARG76W, ASN49W, ASN75W, GLN19O, GLU20O, GLY47W, GLY72W, HIS45W, ILE79W, LEU21O, LYS17O, LYS61W, LYS71W, PHE44W, PHE59W, PHE78W, PRO73W, SER80W, THR12O, VAL50W
• Q-R: ALA104Q, ALA107Q, ALA3R, ALA41Q, ALA42R, ALA45Q, ALA85Q, ALA95Q, ALA98Q, ARG12Q, ARG13R, ARG21R, ARG47Q, ARG49Q, ARG50Q, ARG52Q, ARG63Q, ARG78R, ARG79R, ARG80R, ARG84R, ARG91Q, ASN43R, ASP101Q, ASP90Q, ASP96Q, GLN11R, GLN19Q, GLN36Q, GLN43Q, GLN6R, GLN86R, GLN87R, GLN91R, GLU110Q, GLU45R, GLU46R, GLU70R, GLU88Q, GLY42Q, GLY44R, GLY50R, GLY88R, GLY8R, GLY9R, HIS12R, HIS89R, ILE16Q, ILE39Q, ILE41R, ILE49R, ILE74R, ILE89Q, ILE93Q, ILE97Q, LEU108Q, LEU39R, LEU82Q, LEU94Q, LYS102Q, LYS10R, LYS111Q, LYS15Q, LYS40Q, LYS48R, LYS53Q, LYS71R, LYS73R, LYS76R, LYS85R, LYS92Q, MET1R, MET40R, PHE100Q, PHE105Q, PHE35Q, PHE53R, PHE5R, PHE77R, PRO52R, SER7R, SER86Q, THR106Q, TYR2R, TYR31Q, TYR44Q, TYR46Q, TYR83R, VAL103Q, VAL109Q, VAL14R, VAL20R, VAL38Q, VAL38R, VAL47R, VAL4R, VAL51R, VAL54R, VAL72R, VAL75R, VAL87Q, VAL99Q
• Q-0: ALA26Q, ARG120, ARG27Q, ARG29Q, ARG90, GLY25Q, LYS110, LYS60, MET140, PRO70, SER100, THR80, TYR24Q, VAL30Q, VAL33Q
• S-0: ALA200, ALA21S, ALA230, ALA32S, ALA43S, ALA440, ALA44S, ARG120, ARG150, ARG160, ARG18S, ARG390, ASN40S, ASP190, ASP22S, ASP34S, ASP450, GLN15S, GLN31S, GLU350, HIS370, HIS410, ILE24S, ILE35S, ILE420, LEU19S, LEU210, LEU23S, LEU270, LEU33S, LEU36S, LEU380, LYS16S, LYS27S, LYS360, LYS41S, SER170, SER260, SER30S, THR220, THR250, THR37S, THR39S, THR430, TYR38S, VAL17S, VAL20S, VAL240, VAL29S
• T-Y: ALA13T, ALA32Y, ALA33Y, ALA35T, ALA46T, ALA99T, ARG12T, ARG23Y, ARG29Y, ARG3T, ARG47Y, ARG6T, ASN15Y, ASN20Y, ASN27Y, ASP94T, GLN25Y, GLN31Y, GLN36Y, GLU100T, GLU17Y, GLU4T, GLU52T, GLU5T, GLY35Y, GLY97T, GLY98T, HIS15T, LEU11T, LEU14Y, LEU18Y, LEU19Y, LEU21Y, LEU22Y, LEU28Y, LEU32T, LEU37Y, LEU50T, LEU7T, LEU8T, LYS33T, LYS49T, LYS54Y, LYS9T, MET1T, MET30Y, PHE26Y, PHE51T, PHE95T, PRO14T, SER17T, SER34Y, THR16Y, VAL10T, VAL16T, VAL34T, VAL47T, VAL50Y, VAL53T, VAL53Y, VAL96T
• T-2: ALA402, ARG73T
• W-3: ALA363, ARG393, ARG413, ARG54W, LYS383, THR373
• 1-3: ARG443, ARG51, GLU61, GLY31, HIS181, HIS303, ILE313, ILE81, LEU323, LYS241, LYS343, LYS353, LYS371, LYS403, LYS541, LYS71, LYS91, PHE191, PRO401, THR211, THR221, THR231, THR333, THR373, TYR201