3J00

structure of the ribosome-secye complex in the membrane environment

• Total interactions analyzed: 325
• Total true interactions: 29
• Strongest Interaction:
  • Chains: J-N
  • Int. Res.: 54
  • Norm. En. per Res.: -4.8965
• Hub Node: B(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
0-1	-70.3375	-221.5559	-273.007	-564.9005	213	4	0	12966	22	107	105
B-C	0.0	0.0	-0.0027	-0.0027	3	0	0	3	0	2	2
B-E	0.0	-3.4785	-4.7408	-8.2193	13	0	0	479	0	3	6
B-H	0.0	0.0	-0.1796	-0.1796	7	0	0	75	0	2	2
B-U	-8.891	19.8578	-35.7916	-24.8248	29	1	0	1900	1	16	22
C-E	-4.2692	-26.1381	-11.3994	-41.8068	17	0	0	688	2	9	11
C-J	-11.7126	1.5468	-275.784	-285.9497	109	5	4	10389	1	30	34
C-N	-8.5304	-32.7209	-234.33	-275.5814	85	2	4	8991	3	34	34
D-E	-10.7881	-32.7261	-106.981	-150.4952	58	3	1	4217	2	16	12
D-P	0.0	0.0	-0.0045	-0.0045	3	0	0	9	0	0	1
E-H	-17.5074	-24.4974	-164.47	-206.4748	67	1	1	6970	4	28	25
E-L	0.0	0.0	-0.007	-0.007	2	0	0	5	0	0	0
F-O	0.0	0.0	-0.0003	-0.0003	2	0	0	1	0	1	0
F-R	-27.1823	5.091	-241.542	-263.6334	74	5	6	9724	3	18	29
G-I	-6.6807	2.4586	-87.8204	-92.0426	47	1	2	4036	0	12	16
G-K	-2.3467	-1.1719	-155.78	-159.2986	63	3	2	6329	0	7	18
G-U	0.0	0.0	-37.6804	-37.6804	27	0	1	1653	0	0	8
H-L	0.0	0.0	-6.6729	-6.6729	9	0	1	509	0	0	0
H-Q	0.0	2.5929	-34.0375	-31.4446	17	0	0	1532	0	4	9
I-J	0.0	-2.593	-13.3423	-15.9353	21	0	0	944	0	10	14
I-N	0.0	0.0	-22.2067	-22.2067	7	0	0	549	0	0	2
J-N	-27.6085	-31.9742	-204.828	-264.4107	54	1	6	8092	1	16	25
K-R	0.0	-0.1847	-34.8732	-35.0579	19	0	0	1500	0	6	13
K-U	-6.5965	30.4723	-345.004	-321.1282	87	8	5	14247	2	37	43
L-Q	0.0	0.0	-35.1436	-35.1436	18	0	3	1510	0	0	6
M-S	-15.1708	-13.2269	-136.124	-164.5217	58	5	1	5744	3	13	40
N-S	0.0	-8.4473	-78.2136	-86.6609	38	1	3	3714	1	10	9
O-Q	0.0	0.0	-9.8553	-9.8553	8	0	0	425	0	1	2
R-U	-4.0303	-8.2013	-20.0056	-32.2372	32	0	0	1549	0	13	18

Interface residues

• 0-1: ALA1300, ALA1301, ALA1520, ALA1521, ALA1540, ALA1541, ALA1581, ALA1641, ALA1760, ALA1761, ALA1801, ALA1871, ALA1960, ALA2100, ALA950, ALA951, ARG1161, ARG1230, ARG1231, ARG1510, ARG1511, ARG1531, ARG1730, ARG1731, ARG1770, ARG1771, ARG1880, ARG1881, ARG830, ASN1840, ASN1841, ASN2411, ASN740, ASN741, ASP1030, ASP1031, ASP2130, ASP510, ASP511, ASP730, ASP731, ASP890, ASP891, GLN1090, GLN1170, GLN1171, GLN1271, GLN1320, GLN1321, GLN1720, GLN1721, GLN630, GLN631, GLN690, GLN691, GLN840, GLU1100, GLU1110, GLU1111, GLU1130, GLU1200, GLU1201, GLU1250, GLU1251, GLU1280, GLU1360, GLU1361, GLU1390, GLU1391, GLU1470, GLU1471, GLU1690, GLU1691, GLU1831, GLU1910, GLU1911, GLU1980, GLU1981, GLU2051, GLU2341, GLU2351, GLU620, GLU621, GLU700, GLU701, GLU780, GLU781, GLU800, GLU850, GLU851, GLU920, GLU921, GLY1290, GLY1291, GLY1850, GLY1851, GLY810, HIS1550, HIS1551, HIS1620, HIS1621, HIS1990, HIS1991, LEU1140, LEU1141, LEU1220, LEU1221, LEU1260, LEU1261, LEU1370, LEU1371, LEU1410, LEU1411, LEU1440, LEU1441, LEU1590, LEU1591, LEU1631, LEU1701, LEU1781, LEU1810, LEU1811, LEU1891, LEU2000, LEU2001, LEU2030, LEU2031, LEU2300, LEU750, LEU751, LEU820, LEU821, LEU900, LYS1070, LYS1071, LYS1180, LYS1181, LYS1330, LYS1331, LYS1400, LYS1401, LYS1950, LYS1951, LYS2060, LYS2061, LYS2260, LYS2381, LYS2391, LYS590, LYS591, LYS770, LYS880, LYS881, LYS960, LYS961, MET1120, MET1481, MET860, MET861, PHE1040, PHE2250, PHE2290, PHE710, PHE711, PRO1210, PRO1211, PRO1430, PRO1431, PRO1650, PRO1651, PRO2091, PRO660, PRO661, PRO990, PRO991, SER1420, SER1421, SER2010, SER2280, SER2310, SER520, SER521, SER550, SER551, SER580, SER581, THR1611, THR1970, THR2020, THR2021, THR2371, THR540, THR541, THR560, THR561, TRP501, TRP720, TYR1000, TYR1001, TYR1150, TYR1151, TYR1660, TYR1661, TYR1920, TYR1921, TYR2361, VAL1190, VAL1191, VAL2270, VAL670, VAL930, VAL931, VAL971
• B-C: GLU132B, ILE206C, LYS127B
• B-E: ALA1E, ARG67E, ARG68E, ASN176B, ASN177B, ASN69E, GLU64E, GLY179B, HIS2E, LEU178B, LYS104B, LYS65E, THR101B
• B-H: ALA18H, ALA19H, ASN20H, LYS21H, LYS25B, LYS27B, PRO24B
• B-U: ALA205B, ALA56U, ALA64U, ALA74B, ALA75B, ARG207B, ARG20B, ARG66U, ARG68U, ARG73B, ASN63U, ASP166B, ASP204B, GLN18B, GLU62U, HIS167B, HIS17B, HIS55U, HIS93B, ILE206B, LEU59U, LEU69U, LYS58U, LYS72B, SER76B, THR19B, THR67U, THR71B, TYR21B
• C-E: ALA52E, ALA57E, ARG130C, ARG131C, ARG135C, ARG168C, ARG53E, GLN138C, GLU165C, GLU54E, LYS134C, MET133C, PHE32E, PRO56E, TRP166C, TYR167C, VAL55E
• C-J: ALA12J, ALA211C, ALA212C, ALA21J, ALA220C, ALA23C, ALA23J, ALA60C, ALA61J, ALA93J, ALA94J, ARG16J, ARG228C, ARG231C, ARG37J, ARG45J, ARG58C, ARG5J, ARG64C, ARG68J, ARG72J, ARG9J, ASN24C, ASN31C, ASN3J, ASP14J, ASP19J, ASP63J, ASP91J, ASP97J, GLN20J, GLN215C, GLN222C, GLN226C, GLN227C, GLN2J, GLN35J, GLN4J, GLN99J, GLU214C, GLU217C, GLU24J, GLU27C, GLU27J, GLU47J, GLU57C, GLU66J, GLU78J, GLY12C, GLY1C, GLY230C, GLY38J, GLY8C, GLY95J, HIS15J, HIS5C, HIS70J, ILE100J, ILE13C, ILE18J, ILE25J, ILE40J, ILE53J, ILE56C, ILE67J, ILE9C, LEU10J, LEU17J, LEU42J, LEU71J, LEU73J, LEU92J, LYS11J, LYS218C, LYS224C, LYS225C, LYS229C, LYS232C, LYS30J, LYS61C, MET1J, MET210C, MET88J, PHE13J, PHE22C, PHE28C, PHE49J, PRO216C, PRO39J, PRO41J, PRO59C, SER19C, SER62C, THR20C, THR22J, THR25C, THR69J, TRP17C, TRP21C, TYR65J, VAL14C, VAL213C, VAL26J, VAL36J, VAL4C, VAL74J, VAL77J, VAL96J, VAL98J
• C-N: ALA112C, ALA23C, ALA29C, ALA86N, ALA87N, ALA98N, ARG10C, ARG39C, ARG53C, ARG58C, ARG64N, ARG74N, ARG84N, ARG89N, ASN184C, ASN18C, ASN24C, ASN31C, ASN7C, ASP182C, ASP30C, ASP33C, ASP35C, CYS63N, GLN40C, GLN65N, GLU27C, GLU85N, GLU91N, GLY12C, GLY1C, GLY77N, GLY8C, GLY90N, GLY94N, HIS5C, ILE13C, ILE54C, ILE56C, ILE92N, ILE9C, LEU11C, LEU32C, LEU73N, LEU78N, LEU95N, LYS113C, LYS15C, LYS198C, LYS26C, LYS37C, LYS3C, LYS6N, LYS75N, LYS82N, LYS96N, LYS97N, MET88N, PHE22C, PHE28C, PHE36C, PHE72N, PHE76N, PRO16C, PRO6C, PRO93N, SER186C, SER19C, SER34C, SER79N, SER99N, THR185C, THR20C, THR25C, THR66N, TRP17C, TRP200C, TRP21C, TYR183C, VAL197C, VAL199C, VAL38C, VAL4C, VAL55C, VAL83N
• D-E: ALA106E, ALA109E, ALA112E, ALA79D, ARG111E, ARG46D, ASN121E, ASN84D, ASN88D, ASP49D, GLN53D, GLU100E, GLU115E, GLU196D, GLU201D, GLU56D, GLU87D, GLY101E, GLY103E, GLY107E, GLY108E, GLY51D, GLY78E, GLY83D, GLY86D, HIS120E, HIS197D, ILE104E, ILE105E, ILE15E, ILE194D, ILE199D, ILE59E, LEU123E, LEU14E, LEU198D, LEU202D, LEU47D, LEU54D, LEU81D, LYS125E, LYS13E, LYS205D, LYS82D, SER204D, SER48D, SER99E, THR102E, THR85D, TYR203D, TYR50D, TYR75D, VAL119E, VAL122E, VAL17E, VAL200D, VAL52D, VAL55E
• D-P: ARG127D, ASN125D, LYS46P
• E-H: ALA129H, ALA153E, ALA154E, ALA69H, ALA96H, ALA98E, ARG113H, ARG156E, ASN145E, ASN147E, ASN37H, ASP47H, GLN66H, GLN81E, GLN96E, GLU150E, GLU162E, GLU41H, GLU42H, GLU46H, GLU72H, GLY157E, GLY43H, GLY67H, GLY86E, GLY97H, GLY99H, HIS82E, ILE100H, ILE163E, ILE45H, LEU39H, LEU62H, LEU80E, LEU98H, LYS155E, LYS158E, LYS166E, LYS40H, LYS49H, LYS63H, LYS68H, LYS85E, LYS93H, MET146E, MET151E, MET95E, MET95H, PHE44H, PHE48H, PHE65H, PRO149E, PRO83E, PRO97E, SER148E, SER159E, SER73H, THR111H, THR61H, TYR64H, VAL128H, VAL152E, VAL160E, VAL70H, VAL71H, VAL84E, VAL94H
• E-L: ARG13L, TYR127E
• F-O: ARG2F, SER1O
• F-R: ALA105F, ALA26R, ALA48F, ALA57F, ALA57R, ALA61R, ALA95F, ALA99F, ARG109F, ARG45F, ARG56R, ARG60R, ARG62R, ARG72R, ARG86F, ARG91F, ASN63F, ASP115F, ASP21R, ASP24R, ASP71R, GLN46F, GLN74R, GLU108F, GLU19R, GLU5F, GLU98F, GLY36R, GLY43F, HIS3F, HIS73R, ILE20R, ILE25R, ILE51F, ILE6F, LEU28R, LEU47F, LEU61F, LEU64R, LEU66R, LEU67R, LYS104F, LYS106F, LYS23R, LYS29R, LYS59R, LYS93F, MET102F, MET62F, MET88F, MET90F, MET9F, PHE116F, PHE8F, PRO101F, PRO50F, PRO68R, SER100F, SER65R, SER87F, THR27R, THR70R, THR92F, TRP42F, TYR22R, TYR49F, TYR59F, TYR63R, TYR69R, VAL103F, VAL60F, VAL7F, VAL89F, VAL96F
• G-I: ALA100I, ALA23G, ALA38G, ALA43I, ARG108I, ARG11I, ARG44I, ARG48I, ARG79I, ARG98I, ARG9G, ASP106I, ASP14G, GLN49I, GLU20G, GLU39G, GLU41I, GLU52I, GLY101I, GLY18G, ILE11G, ILE41G, LEU12G, LEU51I, LEU53I, LEU97I, LYS10G, LYS16G, LYS35G, LYS99I, MET45I, PHE102I, PHE17G, PRO13G, PRO15G, PRO50I, SER19G, SER36G, SER40G, SER72I, THR104I, THR37G, THR42I, TYR43G, VAL26G, VAL46I, VAL47I
• G-K: ALA144G, ALA146G, ALA149G, ALA167G, ALA1K, ALA24K, ALA3K, ALA61K, ALA62K, ARG126K, ARG142G, ARG154G, ARG52K, ARG55K, ARG92K, ARG97K, ASN147G, ASN27K, GLN171G, GLN63K, GLN85G, GLU145G, GLU93K, GLY166G, GLY50K, GLY53K, GLY80G, GLY81G, GLY87K, GLY89K, GLY91K, HIS152G, LEU158G, LYS148G, LYS170G, LYS2K, LYS56K, MET143G, PHE150G, PHE161G, PHE26K, PHE51K, PHE60K, PRO59K, PRO87G, PRO88K, PRO90K, SER162G, SER168G, SER169G, SER49K, SER54K, SER57K, SER82G, SER94K, THR58K, THR83G, THR95K, TRP155G, TYR84G, VAL64K, VAL85K, VAL86G
• G-U: ALA165G, ALA167G, ALA25U, ALA29U, ARG159G, ARG16U, ARG17U, ARG20U, ARG32U, GLN164G, GLN171G, GLY166G, HIS163G, LEU158G, LEU15U, LEU28U, LYS170G, LYS19U, LYS24U, PHE161G, PHE18U, PRO1U, SER162G, SER168G, SER169G, SER21U, TRP155G
• H-L: ALA1L, ARG79H, ARG83H, ASN4L, GLY81H, LEU82H, PRO80H, THR2L, VAL3L
• H-Q: ARG79H, ARG83H, GLY34Q, GLY81H, HIS30Q, ILE32Q, ILE84H, LEU82H, LYS29Q, LYS35Q, LYS86H, PHE36Q, PRO31Q, PRO80H, SER78H, TYR33Q, TYR85H
• I-J: ALA61J, ARG112I, ARG123I, ARG48J, ARG62J, ASP60J, ASP63J, GLN64J, GLU66J, GLY116I, LEU117I, LYS114I, LYS46J, LYS59J, PHE126I, PHE49J, PRO124I, THR50J, TYR65J, VAL115I, VAL51J
• I-N: ALA98N, ARG112I, LYS113I, LYS114I, SER99N, TRP100N, VAL115I
• J-N: ALA12J, ALA87N, ALA98N, ARG16J, ARG48J, ARG62J, ARG68J, ARG68N, ARG80N, ARG84N, ASP14J, ASP63J, GLN64J, GLU47J, GLU66J, GLU85N, GLY71N, GLY94N, GLY95J, HIS15J, HIS56J, HIS70J, ILE53J, ILE67J, ILE81N, ILE92N, LEU17J, LEU52J, LEU73N, LEU78N, LEU95N, LYS46J, LYS75N, LYS82N, LYS96N, LYS97N, MET88N, PHE13J, PHE49J, PHE72N, PHE76N, PRO55J, PRO93N, SER54J, SER79N, SER99N, THR44J, THR50J, THR69J, TRP100N, TYR65J, VAL51J, VAL57J, VAL83N
• K-R: ARG62R, ARG72R, ASP111K, ASP71R, GLN74R, HIS117K, HIS73R, ILE115K, LYS37R, MET84K, PRO114K, PRO116K, SER35R, THR110K, THR113K, THR70R, TYR63R, TYR69R, VAL112K
• K-U: ALA101K, ALA102K, ALA14U, ALA24K, ALA29U, ALA98K, ARG105K, ARG121K, ARG126K, ARG127K, ARG16U, ARG17U, ARG20U, ARG32U, ARG33U, ARG34U, ARG36K, ARG6U, ARG92K, ARG97K, ASN100K, ASN108K, ASN118K, ASN27K, ASN28K, ASN8U, ASP111K, ASP12U, CYS120K, CYS22U, GLU23U, GLU30U, GLU35U, GLU7U, GLU82K, GLU93K, GLU9U, GLY26U, GLY87K, GLY89K, GLY91K, HIS23K, ILE106K, ILE109K, ILE115K, ILE22K, ILE3U, ILE96K, LEU15U, LEU28U, LEU81K, LEU99K, LYS124K, LYS125K, LYS19U, LYS24U, LYS4U, LYS86K, MET84K, PHE104K, PHE11U, PHE26K, PHE36U, PRO10U, PRO114K, PRO116K, PRO122K, PRO123K, PRO1U, PRO88K, PRO90K, SER21U, SER25K, SER94K, THR107K, THR110K, THR113K, THR95K, TYR37U, VAL112K, VAL13U, VAL27U, VAL2U, VAL31U, VAL5U, VAL83K, VAL85K
• L-Q: ALA12L, ARG11L, ARG8L, ASN4L, GLN5L, GLY34Q, HIS30Q, ILE32Q, ILE37Q, LEU6L, LYS35Q, LYS9L, PHE36Q, PRO10L, THR2L, TYR33Q, VAL3L, VAL7L
• M-S: ALA74S, ALA83S, ALA88S, ARG2S, ARG35S, ARG77S, ARG78M, ARG80S, ARG86M, ARG89M, ARG91M, ARG92M, ARG97M, ASP63S, ASP81M, ASP85S, CYS84M, GLU64S, GLU72S, GLY67S, GLY71S, GLY81S, GLY83M, GLY87M, GLY98M, HIS68S, HIS82S, ILE115M, LEU79M, LEU82M, LEU88M, LEU94M, LYS109M, LYS116M, LYS117M, LYS69S, LYS87S, LYS89S, LYS90S, LYS91S, MET65S, MET80M, PHE60S, PHE73S, PRO1S, PRO75S, SER3S, SER75M, THR101M, THR62S, THR76S, THR78S, TYR79S, TYR85M, VAL59S, VAL61S, VAL66S, VAL96M
• N-S: ALA35N, ALA43N, ARG35S, ARG36S, ARG40N, ARG52N, ARG58N, ASN34N, ASN42N, ASP11S, ASP32N, GLN48N, GLU19S, GLY7S, HIS13S, ILE10S, LEU12S, LEU14S, LEU15S, LEU45N, LEU47N, LEU50N, LYS16S, LYS46N, LYS5S, LYS6S, PHE40S, PHE9S, PRO51N, PRO8S, SER31N, SER34S, SER36N, THR49N, TRP41N, VAL18S, VAL33N, VAL44N
• O-Q: ALA81Q, ARG71O, ASP73O, LEU83Q, LYS70O, LYS72O, TYR68O, VAL74O
• R-U: ALA47U, ALA51U, ARG42R, ARG44U, ARG6U, ARG72R, ASP71R, CYS22U, GLN74R, GLU23U, GLU34R, GLY36R, HIS73R, ILE3U, ILE43R, LEU28U, LYS19U, LYS24U, LYS37R, LYS48U, LYS4U, PHE18U, PRO40R, PRO68R, SER21U, SER35R, SER50U, THR33R, THR70R, VAL27U, VAL2U, VAL5U