3IZS
localization of the large subunit ribosomal proteins into a 6.1 a cryo-em map of saccharomyces cerevisiae translating 80s ribosome
Total interactions analyzed 1275
Total true interactions 85
Strongest Interaction Chains B-H
Int. Res. 30
Norm. En. per Res. -3.9105
Hub Node F(8)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-k 0.0 4.5064 -13.6286 -9.1222 28 0 0 1314 0 7 12
B-H -18.8681 -34.5543 -63.8913 -117.3136 30 2 0 2301 1 8 15
B-P 0.0 0.0 -9.7887 -9.7887 11 2 0 459 0 0 4
B-X 0.0 0.0 -13.8902 -13.8902 9 0 0 570 0 0 3
B-a 0.0 0.0 -2.2644 -2.2644 20 0 0 425 0 2 10
B-f 0.0 0.0 -0.1328 -0.1328 9 0 0 61 0 0 0
B-m -51.6672 -3.0758 -294.768 -349.511 132 57 16 15197 0 17 28
B-x -2.5374 0.0 -131.816 -134.3534 42 24 0 5531 0 0 0
C-K 0.0 -7.8001 -95.4746 -103.2747 55 4 0 4289 0 8 17
C-M -7.4718 6.7339 -138.62 -139.3579 54 15 3 5363 0 23 32
C-Z 0.0 2.1763 -96.6283 -94.452 52 17 0 4065 0 9 19
C-g 0.0 0.0 -0.0316 -0.0316 2 0 0 12 0 0 2
E-r 0.0 0.0 -26.7163 -26.7163 14 1 0 875 0 0 0
E-Q -13.2726 25.4983 -82.8868 -70.6611 35 7 0 3299 0 8 27
G-N 0.0 17.6469 -25.2219 -7.575 40 26 4 3972 0 13 18
G-V 0.0 0.0 -0.1436 -0.1436 3 0 0 40 0 0 0
G-h 0.0 1.2637 -32.4054 -31.1417 24 4 0 1690 0 0 11
G-j 0.0 -21.8963 -62.5461 -84.4424 39 7 0 2712 1 10 9
G-D 0.0 0.6809 0.0 0.6809 2 0 0 0 0 0 0
F-K 0.0 -0.796 -12.4688 -13.2648 17 2 0 930 0 4 17
F-N -12.0315 12.3045 -95.9574 -95.6844 58 37 3 5715 1 8 14
F-d 0.0 0.0 -0.0005 -0.0005 2 0 0 1 0 0 0
F-z 0.0 0.0 -10.7799 -10.7799 27 0 0 1204 0 0 0
F-S 0.0 1.3964 5 ARG159S, ARG163S, ASP42F, HIS58F, LYS164S
H-P -3.205 -10.4006 -230.892 -244.4975 85 9 10 9892 0 31 22
H-X -11.2806 0.0 -86.8437 -98.1243 33 4 3 3598 0 2 12
H-k 0.0 -7.0336 -8.9445 -15.9781 32 5 0 1201 0 17 15
H-q 0.0 10.982 -64.4022 -53.4202 31 3 0 2412 0 7 28
H-x 0.0 0.0 -15.6016 -15.6016 13 1 0 1086 0 0 0
s-J 0.0 7.158 -42.2131 -35.0551 29 12 0 1752 0 7 10
s-t 0.0 0.0 291.099 291.099 58 81 16 7409 0 1 0
s-u 0.0 9.4018 -44.5372 -35.1354 53 47 13 6682 0 3 4
s-v -116.485 28.1487 -23.5443 -111.8806 75 59 13 7766 0 14 17
s-w 0.0 -3.493 211.819 208.326 58 63 6 6842 0 4 1
K-N -7.8007 -7.2438 -134.719 -149.7635 56 17 3 5680 1 15 13
K-j -8.3793 -10.3725 -26.061 -44.8129 35 4 0 1571 2 6 9
N-j -17.797 0.0 -11.3485 -29.1455 34 2 0 1229 0 6 2
N-S -27.7283 2.5158 19 ARG13N, ARG159S, ARG163S, ARG74N, ARG97S, ASN11N, ASP148S, ASP40N, ASP98S, GLU16N, HIS145S, ILE38N, LYS142S, LYS157S, LYS42N, LYS43N, THR167S, VAL158S, VAL15N
M-Z -28.4123 -1.6453 201.812 171.7544 55 80 10 5924 0 12 9
P-O 0.0 0.0 -0.4641 -0.4641 4 0 0 69 0 0 1
P-c 0.0 -1.983 -71.4928 -73.4758 38 4 1 3810 0 19 20
P-k -4.0432 8.7991 -134.991 -130.2352 43 16 1 5166 0 17 23
P-r 0.0 0.0 -11.2755 -11.2755 14 0 0 492 0 2 1
O-R -4.4183 13.3134 -84.1526 -75.2576 50 3 0 3858 2 11 21
O-r 0.0 0.0 -0.0058 -0.0058 2 0 0 8 0 0 1
O-L -16.0761 0.0 2 ARG117O, UNK152L
R-U 0.0 0.0 -0.4117 -0.4117 8 0 0 63 0 3 3
R-e 0.0 -17.1784 -53.1978 -70.3762 27 3 0 2026 1 4 7
R-D -6.0409 -8.2595 50.9503 36.6499 41 24 1 2620 0 8 7
T-W 0.0 0.0 -0.0775 -0.0775 2 0 0 22 0 0 0
T-X 0.0 0.0 -0.1623 -0.1623 4 0 0 45 0 2 1
T-p -2.7884 0.0 -19.3607 -22.1491 16 1 0 687 0 0 5
U-e 0.0 0.0 -12.9158 -12.9158 20 0 0 892 0 1 5
U-y 0.0 0.0 -1.7563 -1.7563 8 0 0 206 0 0 0
U-Q 0.0 1.5247 -84.8825 -83.3578 51 7 4 4247 0 6 16
V-g 0.0 9.9577 -0.206 9.7517 6 0 0 27 0 2 6
V-j 0.0 0.0 -8.0752 -8.0752 5 0 0 284 0 0 0
V-o 0.0 0.0 -1.2918 -1.2918 5 0 0 115 0 0 3
V-D 0.0 0.0 -0.1128 -0.1128 6 0 0 35 0 0 3
X-c -3.6475 17.199 -95.2829 -81.7314 65 4 3 5004 0 15 20
X-o 0.0 3.7351 -41.0342 -37.2991 20 3 0 1986 0 0 10
Y-l 0.0 0.0 -0.002 -0.002 3 0 0 2 0 0 0
Y-o 0.0 0.0 -0.0673 -0.0673 7 0 0 31 0 0 2
Y-D -3.4595 35.074 0.0 31.6145 7 0 0 0 0 0 0
a-f 0.0 -5.4536 -88.5308 -93.9844 36 7 3 3898 0 7 7
a-i -14.2251 28.1362 26.2136 40.1247 64 61 0 6698 0 7 22
a-m 0.0 2.5564 -1.5943 0.962 11 0 0 280 0 0 7
a-p 0.0 0.0 -0.0004 -0.0004 2 0 0 1 0 0 1
a-x 0.0 0.0 -12.3865 -12.3865 21 3 0 889 0 0 0
d-z 0.0 0.0 -0.0375 -0.0375 3 0 0 7 0 0 0
c-l 0.0 5.82 -22.0231 -16.2031 28 2 0 1084 0 0 14
c-o 0.0 0.0 -0.1139 -0.1139 2 0 0 21 0 0 0
f-i -68.1043 -3.3238 541.159 469.7308 40 67 1 3185 0 7 8
f-m 0.0 6.9206 -36.8559 -29.9353 30 0 0 1892 0 2 9
f-x 0.0 0.0 -10.294 -10.294 10 3 0 465 0 0 0
e-D -10.9688 7.9851 0.0 -2.9837 18 0 0 0 0 0 0
e-S -29.7029 37.8384 13 ALA65e, ALA69e, ARG28S, ARG67e, ASP68e, GLU233e, GLU234e, GLU36S, LYS127S, LYS30S, LYS66e, LYS69S, LYS70e
h-j 0.0 0.0 -0.6949 -0.6949 10 0 0 112 0 0 2
i-x 0.0 0.0 -0.6656 -0.6656 11 0 0 169 0 0 0
l-o 0.0 0.0 -24.4519 -24.4519 24 0 1 1543 0 0 15
l-D 0.0 2.0711 -8.8421 -6.771 13 1 0 538 0 1 6
t-u 0.0 0.0 -0.0908 -0.0908 8 0 0 30 0 3 3
t-v -4.3022 -5.6349 -16.3059 -26.243 60 89 24 8356 0 4 4
t-w -17.581 38.1073 418.46 438.9863 34 77 0 3801 1 8 14
u-w -9.3809 -6.3201 400.54 384.839 66 128 24 9217 0 4 7