3IZR
localization of the large subunit ribosomal proteins into a 5.5 a cryo-em map of triticum aestivum translating 80s ribosome
Total interactions analyzed 1326
Total true interactions 87
Strongest Interaction Chains H-X
Int. Res. 24
Norm. En. per Res. -4.3318
Hub Node B(11)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-L 0.0 0.0 0.2176 0.2176 24 21 0 2160 0 0 0
A-k 0.0 -1.2209 -7.1445 -8.3654 21 0 0 538 0 7 10
B-H 0.0 0.0 -23.0518 -23.0518 17 3 0 1049 0 4 15
B-P 0.0 0.0 -7.7031 -7.7031 12 0 0 415 0 0 5
B-X 0.0 7.0264 -17.0812 -10.0548 10 0 0 820 0 0 6
B-f 0.0 0.0 -0.3525 -0.3525 7 0 0 65 0 0 0
B-a 0.0 0.0 -0.6144 -0.6144 16 0 0 167 0 3 3
B-x -11.2969 0.0 -122.353 -133.6499 41 16 0 5316 0 0 0
B-m -75.7259 -28.0378 21 ALA65m, ARG80m, ASP47B, GLN168B, GLN86B, GLU30m, GLU80B, GLY171B, GLY66m, HIS50B, ILE48B, LYS13m, LYS177B, LYS181B, LYS50m, LYS62m, LYS64m, MET82B, SER75m, THR84B, VAL63m
E-Q -16.7851 55.2225 -91.8217 -53.3842 38 7 0 3567 0 4 32
E-r 0.0 0.0 -8.6718 -8.6718 11 0 0 432 0 0 0
F-z 0.0 0.0 -6.0229 -6.0229 28 3 0 1186 0 0 0
F-N -11.8649 2.8838 -71.9508 -80.9319 26 12 0 2722 0 3 5
F-S -8.2373 -39.4592 -70.8898 -118.5863 37 5 1 2697 3 17 5
F-K 0.0 6.8493 2 ARG64F, HIS138K
H-P -21.3541 -25.0191 -201.802 -248.1752 86 11 7 9359 3 25 23
H-X -29.8858 0.5346 -74.6115 -103.9627 24 18 1 3530 0 0 18
H-q -12.4113 0.0 -14.0269 -26.4382 25 1 0 880 0 0 17
H-k -5.3737 -1.6685 -61.6894 -68.7316 48 5 1 3114 0 13 16
H-x 0.0 0.0 -10.6621 -10.6621 13 0 0 872 0 0 0
M-Z -26.8603 7.4754 -113.928 -133.3129 54 21 5 5879 0 11 19
M-C -22.8893 5.6151 -76.096 -93.3702 51 26 1 3986 0 22 30
P-O 0.0 0.0 -0.0102 -0.0102 4 0 0 8 0 0 1
P-l 0.0 0.0 -0.051 -0.051 2 0 0 20 0 0 2
P-r -2.4519 0.0 -21.7264 -24.1783 17 1 0 931 0 1 4
P-L 0.0 0.0 -9.7839 -9.7839 11 0 0 731 0 0 0
P-k -40.1982 -22.3541 -81.0727 -143.625 49 25 1 4827 1 20 20
P-c 0.0 1.0391 -47.7328 -46.6937 37 2 0 2850 0 15 27
O-R -11.8307 -6.9269 -36.9497 -55.7073 42 5 0 2264 0 7 19
O-r 0.0 0.0 -0.0246 -0.0246 4 0 0 20 0 0 1
O-L 0.0 0.0 -67.8268 -67.8268 124 102 0 11774 0 0 0
R-U 0.0 0.0 -0.0013 -0.0013 5 0 0 4 0 2 1
R-L 0.0 0.0 -1.3755 -1.3755 5 0 0 199 0 0 0
R-e -10.7236 -23.7545 -51.0977 -85.5758 26 3 0 2019 1 6 1
R-D -23.216 -13.8261 21 ARG129R, ARG317D, ARG37D, ARG38R, ARG39R, ARG42D, ASN326D, ASP124R, ASP22R, ASP23R, ASP39D, GLU134R, GLU313D, GLU318D, LYS20R, LYS319D, LYS321D, LYS325D, LYS41R, TYR25R, VAL303D
Q-U 0.0 1.5889 -103.82 -102.2311 52 5 5 4469 0 8 18
Q-I -20.2165 -12.3102 12 ASP297Q, ASP298Q, ASP302Q, ASP44I, GLU179I, GLU180I, GLU300Q, GLU301Q, GLU304Q, LEU184I, LYS183I, SER291Q
T-X 0.0 0.0 -0.0025 -0.0025 2 0 0 3 0 2 1
T-W 0.0 0.0 -0.0009 -0.0009 3 0 0 3 0 0 0
T-p -4.8758 3.6902 -19.2918 -20.4775 14 3 0 790 0 0 8
U-y -7.562 0.0 -17.7754 -25.3374 18 1 0 982 0 0 0
U-e 0.0 0.0 -8.2483 -8.2483 22 1 0 538 0 5 8
X-o -2.2893 0.4279 -35.6387 -37.5002 22 0 1 1897 0 6 18
X-c 0.0 3.0605 -65.0657 -62.0052 62 4 2 4038 0 6 16
Z-C 0.0 6.5104 -4.518 1.9924 16 2 0 419 0 2 2
Y-o 0.0 -6.6095 -3.6148 -10.2243 8 0 0 313 0 4 3
Y-D -2.7156 5.8022 3 ARG11Y, ARG204D, LYS199D
b-h -5.2553 -4.078 -51.2331 -60.5664 38 19 0 2919 0 12 9
b-G 0.0 -2.3146 -15.2188 -17.5334 23 1 1 1262 0 8 9
b-e 0.0 0.0 -0.0427 -0.0427 7 0 0 18 0 1 1
b-D -2.3764 0.0 2 LYS85b, THR150D
d-z 0.0 0.0 -0.0467 -0.0467 2 0 0 12 0 0 0
f-a 0.0 -7.2722 -60.59 -67.8622 33 5 4 2915 0 6 7
f-i -7.9085 11.5366 -99.6446 -96.0166 43 9 1 4198 1 4 17
f-x 0.0 0.0 -6.8534 -6.8534 10 2 0 394 0 0 0
f-m -2.8952 0.7997 5 ARG90f, ASN50f, ASP59m, CYS42m, LYS44m
h-G 0.0 0.0 -0.0079 -0.0079 3 0 0 7 0 1 1
h-j 0.0 0.0 -2.1143 -2.1143 13 0 0 239 0 0 0
l-o -9.4047 0.0 -43.379 -52.7837 25 1 2 1839 0 0 17
l-c 0.0 1.8457 -24.0454 -22.1997 28 0 0 1400 0 2 14
l-D -6.2982 0.89 3 ARG61D, LYS52l, SER67D
o-p 0.0 0.0 -0.433 -0.433 5 0 0 61 0 0 0
G-N -6.3416 -2.4719 -145.215 -154.0285 41 25 2 5994 1 21 27
G-j 0.0 0.0 -86.8977 -86.8977 37 11 0 3392 0 6 11
G-e 0.0 0.0 -0.0161 -0.0161 4 0 0 13 0 0 1
L-c 0.0 0.0 -45.8998 -45.8998 31 3 0 2462 0 0 0
N-S -34.7621 -29.327 -309.187 -373.2762 108 107 5 16515 2 39 52
N-j -13.3495 -7.0568 -59.1793 -79.5856 44 2 0 2562 0 9 13
N-K -27.4073 -8.2337 14 ALA202K, ARG117N, ARG98N, ARG99N, GLU124N, GLU192K, GLU199K, LEU201K, LYS114N, LYS129N, LYS185K, LYS193K, LYS205K, TYR206K
S-j 0.0 0.0 -0.0115 -0.0115 2 0 0 9 0 0 0
S-e -45.7271 44.6936 -283.795 -284.8286 112 85 6 13480 0 29 42
a-i 0.0 10.8814 -201.158 -190.2766 74 19 4 7996 0 2 24
a-p 0.0 0.0 -0.9449 -0.9449 5 0 0 153 0 0 1
a-x 0.0 0.0 -8.9961 -8.9961 15 1 0 457 0 0 0
i-x -2.6068 0.0 -6.1634 -8.7701 9 0 0 445 0 0 0
j-K -10.4355 27.2865 4 ARG69j, ARG90j, ARG99K, LEU33K
J-s 0.0 9.1046 -7.3352 1.7694 14 0 0 533 0 5 4
t-u 0.0 0.0 -0.7061 -0.7061 9 0 0 110 0 7 5
t-v -16.6521 -16.9726 652.957 619.3324 57 111 21 8353 1 8 7
t-w -17.0407 -16.4382 -106.647 -140.1259 41 24 1 4208 2 10 12
t-s 0.0 0.0 -174.359 -174.359 60 40 15 8351 0 1 0
u-w -3.7496 -20.7001 1107.56 1083.1103 59 138 21 9228 1 8 8
u-s -11.3714 -23.5591 -148.23 -183.1606 49 31 13 7147 2 9 5
v-s -15.8633 -45.0321 -91.5035 -152.3989 77 70 9 9334 6 26 25
w-s -4.2961 13.7449 -160.6 -151.1512 56 36 6 7683 0 1 3
e-D -50.6792 -38.5689 23 ALA39e, ARG147e, ARG355D, ASN167e, ASP185e, GLN405D, GLN66e, GLU184e, GLU357D, GLU35e, GLU41e, LEU67e, LYS169e, LYS29e, LYS342D, LYS356D, LYS358D, LYS362D, LYS365D, LYS36e, LYS44e, LYS68e, THR404D
C-K -7.3772 -68.8738 7 ARG159K, ARG97C, ASP156K, GLU111K, GLU160K, GLU163K, LYS94C