3IYN
3.6-angstrom cryoem structure of human adenovirus type 5
Total interactions analyzed 190
Total true interactions 57
Strongest Interaction Chains A-B
Int. Res. 695
Norm. En. per Res. -4.49
Hub Node E(6)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -626.3411 -176.5464 -2317.65 -3120.5375 695 337 49 99209 18 137 128
A-C -546.3315 -165.7233 -2247.54 -2959.5948 695 303 49 97843 16 136 128
A-E -18.0175 -38.9838 177.824 120.8226 85 92 1 7159 2 25 27
A-N 0.0 8.7148 2 ASP186N, GLU21A
A-O -30.6541 -3.2645 8 GLN8A, GLU21A, GLY26A, LYS3O, MET34O, PHE201O, PRO7A, TYR33O
B-C -566.7371 -168.8136 -2330.22 -3065.7707 702 345 52 99415 16 136 127
B-M -44.5334 -1.3017 15 ARG455M, ARG540M, ARG669B, ARG82B, ARG941B, ASP362B, GLU105M, GLU581B, GLU59M, GLY342B, LYS80B, SER453M, SER692B, SER81M, THR108M
C-E -40.9881 -16.0932 -74.9875 -132.0689 123 133 6 11799 3 15 18
C-K -55.3774 10.9147 17 ALA894C, ALA949C, ARG669C, ARG669K, ARG82K, ASN670C, ASP359K, ASP71K, GLN353C, GLN353K, GLN361C, GLU581K, GLY342C, GLY693K, HIS931C, LEU652K, TYR77K
C-N -8.1084 17.3667 6 ARG87N, ASP58C, ASP89N, GLU90N, HIS53C, THR52C
C-O -12.2677 -5.2908 18 ARG30O, ARG59C, ARG91C, ASN215O, ASP221O, ASP224O, ASP26O, ASP54C, ASP58C, ASP636C, ASP89C, GLU936C, HIS53C, HIS623C, HIS928C, HIS931C, SER627C, THR7O
D-E -568.7781 -167.5507 -2269.09 -3005.4188 702 349 50 99333 16 136 126
D-F -609.8646 -166.4352 -2178.51 -2954.8098 701 386 49 99753 16 138 128
D-G 0.0 0.0 -8.1431 -8.1431 11 1 0 447 0 0 0
D-P -12.6362 -2.4479 4 GLU21D, GLY26D, LYS3P, PHE201P
D-R -75.8285 15.7196 15 ARG18R, ARG746D, ASN43R, ASN658D, ASN754D, ASP901D, GLU50R, GLU751D, LYS745D, LYS861D, SER726D, THR48R, THR660D, THR859D, VAL52R
E-F -562.2965 -160.4216 -2067.13 -2789.8481 700 374 50 100003 16 139 129
E-J 0.0 3.2394 3 ARG735E, ASP734E, ASP734J
E-K -10.1713 0.0 4 ARG62K, ASN733E, SER60K, SER727E
E-Q 0.0 4.6413 4 ARG112Q, ASP108Q, ASP749E, GLU751E
E-R 0.0 -4.5379 2 GLU50R, HIS558E
E-T -3.7175 13.7284 7 ARG112T, ASP806E, ASP807E, GLN106T, GLU113T, LYS809E, LYS811E
F-G -51.8751 8.8682 3.7735 -39.2335 177 149 3 15121 0 15 19
F-J -28.3666 12.7754 9 ARG59F, ARG735J, ARG91F, ARG932F, ASN733J, ASP725J, ASP89F, HIS898J, SER60F
F-K -24.8402 -53.066 7 ARG59F, ARG59K, ASP58F, ASP58K, HIS623F, HIS623K, SER60K
F-P -56.8822 -5.4148 27 ALA24P, ARG30P, ARG59F, ARG634F, ARG91F, ARG932F, ASN635F, ASN90F, ASN948F, ASP221P, ASP224P, ASP26P, ASP54F, ASP58F, ASP636F, ASP89F, GLN25P, GLU936F, GLY225P, HIS623F, HIS928F, HIS931F, SER222P, SER35P, THR7P, TYR226P, TYR9P
F-Q -18.9134 -71.4632 7 ARG103F, ARG66F, ARG72F, ASP610F, ASP97Q, ASP98Q, SER93Q
F-T -19.1363 2.1603 6 ASP610F, ASP74F, ASP98T, LYS586F, LYS608F, LYS99T
G-H -601.1336 -129.811 123 ALA119H, ALA171G, ALA237H, ALA50H, ALA756G, ALA843G, ALA883G, ARG103H, ARG221H, ARG311G, ARG322H, ARG381H, ARG452H, ARG522G, ARG538H, ARG543H, ARG553H, ARG62H, ARG66H, ARG735G, ARG795G, ARG836H, ARG926G, ASN121H, ASN387H, ASN42H, ASN449H, ASN455G, ASN455H, ASN456G, ASN475H, ASN551H, ASN570G, ASN638G, ASN733G, ASN823G, ASN824G, ASP101H, ASP291H, ASP378H, ASP407G, ASP639G, ASP734G, ASP788G, ASP812G, ASP886G, ASP94G, GLN560H, GLN61H, GLN757G, GLN778H, GLN803G, GLN839G, GLU202H, GLU207G, GLU207H, GLU242H, GLU288H, GLU293H, GLU401G, GLU406G, GLU408G, GLU423H, GLU444H, GLU450H, GLU460G, GLU460H, GLU751G, GLU837G, GLY169G, GLY206H, GLY454H, GLY552H, GLY752G, GLY826H, GLY838H, GLY851G, HIS13H, HIS166G, HIS403G, HIS537H, HIS53H, HIS558H, HIS820G, HIS822G, LEU123H, LEU549H, LEU63H, LEU849G, LEU884G, LYS126H, LYS180G, LYS238H, LYS282G, LYS431H, LYS43H, LYS448H, LYS762G, LYS852G, LYS861G, PHE265G, PHE414G, PRO203H, PRO846G, SER116H, SER235H, SER24H, SER267G, SER39G, SER446H, SER641G, THR165G, THR405G, THR426H, THR48H, THR57H, TYR11H, TYR120H, TYR211H, TYR233H, TYR841G, VAL167G, VAL428H
G-I -565.055 -172.9637 123 ALA119G, ALA171I, ALA237G, ALA50G, ALA756I, ALA843I, ARG103G, ARG221G, ARG322G, ARG381G, ARG452G, ARG45G, ARG522I, ARG538G, ARG543G, ARG553G, ARG62G, ARG66G, ARG735I, ARG795I, ARG836G, ARG926I, ASN121G, ASN387G, ASN42G, ASN449G, ASN455I, ASN456I, ASN475G, ASN551G, ASN570I, ASN638I, ASN733I, ASN823I, ASN824I, ASP101G, ASP291G, ASP378G, ASP407I, ASP639I, ASP734I, ASP788I, ASP812I, ASP886I, ASP94I, GLN204G, GLN560G, GLN61G, GLN757I, GLN778G, GLN803I, GLN821I, GLN839I, GLU202G, GLU207G, GLU242G, GLU288G, GLU293G, GLU401I, GLU406I, GLU408I, GLU423G, GLU444G, GLU450G, GLU460G, GLU460I, GLU751I, GLU837I, GLY169I, GLY206G, GLY454G, GLY552G, GLY752I, GLY826G, GLY838G, GLY851I, HIS13G, HIS166I, HIS403I, HIS537G, HIS53G, HIS558G, HIS820I, HIS822I, LEU123G, LEU549G, LEU63G, LEU736I, LEU737I, LEU849I, LEU884I, LYS126G, LYS180I, LYS238G, LYS282I, LYS431G, LYS43G, LYS448G, LYS762I, LYS852I, LYS861I, PHE265I, PHE414I, PRO203G, PRO846I, SER116G, SER235G, SER24G, SER267I, SER39I, SER446G, SER641I, THR165I, THR405I, THR426G, THR48G, THR57G, TYR11G, TYR120G, TYR233G, TYR841I, VAL167I, VAL428G
G-J -6.3193 -3.7016 6 ARG669J, ASN670J, ASP734G, ASP901G, GLU936J, SER726G
G-P -85.4698 17.5937 24 ALA949G, ARG30P, ARG43P, ARG48P, ARG634G, ARG669G, ARG926G, ASN32P, ASN355G, ASN895G, ASN948G, ASP26P, ASP636G, ASP639G, GLU936G, HIS39P, HIS928G, HIS931G, ILE189P, ILE31P, SER35P, THR950G, TYR33P, TYR939G
G-T 0.0 -4.6338 2 GLU50T, HIS558G
H-I -593.767 -167.5709 122 ALA119I, ALA171H, ALA237I, ALA50I, ALA756H, ALA843H, ALA883H, ARG103I, ARG221I, ARG322I, ARG381I, ARG452I, ARG522H, ARG538I, ARG543I, ARG553I, ARG62I, ARG66I, ARG735H, ARG795H, ARG836I, ARG926H, ASN121I, ASN387I, ASN449I, ASN455H, ASN455I, ASN456H, ASN475I, ASN551I, ASN570H, ASN638H, ASN733H, ASN823H, ASN824H, ASP101I, ASP291I, ASP378I, ASP407H, ASP639H, ASP734H, ASP788H, ASP812H, ASP886H, ASP94H, GLN560I, GLN61I, GLN757H, GLN778I, GLN803H, GLN839H, GLU202I, GLU207H, GLU207I, GLU242I, GLU288I, GLU293I, GLU401H, GLU406H, GLU408H, GLU423I, GLU444I, GLU450I, GLU460H, GLU460I, GLU751H, GLU837H, GLY169H, GLY206I, GLY454I, GLY552I, GLY752H, GLY826I, GLY838I, GLY851H, HIS13I, HIS166H, HIS403H, HIS537I, HIS53I, HIS558I, HIS820H, HIS822H, LEU123I, LEU549I, LEU63I, LEU736H, LEU737H, LEU849H, LEU884H, LYS126I, LYS180H, LYS238I, LYS282H, LYS431I, LYS43I, LYS448I, LYS762H, LYS852H, LYS861H, PHE265H, PHE414H, PRO203I, PRO846H, SER116I, SER235I, SER24I, SER267H, SER39H, SER446I, SER641H, THR165H, THR405H, THR426I, THR48I, THR57I, TYR11I, TYR120I, TYR233I, TYR841H, VAL167H, VAL428I
H-J -21.4096 -56.0442 11 ARG103H, ARG62H, ARG72H, ASP610H, ASP71J, ASP89H, GLU73J, GLU936J, HIS931J, SER352J, VAL70J
H-Q 0.0 -13.5662 2 ARG73Q, GLU242H
H-S -35.5359 -37.9345 13 ARG18S, ARG26S, ASP35S, ASP362H, ASP695H, GLN27S, LYS586H, LYS685H, PRO696H, SER32S, SER692H, THR684H, TRP22S
I-T -62.7941 7.1753 13 ARG18T, ARG746I, ASN43T, ASN658I, ASN754I, ASP749I, ASP901I, GLU50T, GLU751I, LYS745I, LYS861I, THR859I, VAL52T
J-K -576.6097 -171.9952 119 ALA119K, ALA171J, ALA237K, ALA50K, ALA756J, ALA843J, ARG103K, ARG221K, ARG322K, ARG381K, ARG452K, ARG522J, ARG538K, ARG543K, ARG553K, ARG62K, ARG66K, ARG735J, ARG795J, ARG836K, ARG926J, ASN121K, ASN387K, ASN42K, ASN449K, ASN455J, ASN456J, ASN475K, ASN551K, ASN570J, ASN638J, ASN733J, ASN823J, ASN824J, ASP101K, ASP291K, ASP378K, ASP407J, ASP639J, ASP734J, ASP788J, ASP812J, ASP886J, ASP94J, GLN560K, GLN61K, GLN757J, GLN778K, GLN803J, GLN839J, GLN889J, GLU202K, GLU207K, GLU242K, GLU288K, GLU293K, GLU401J, GLU406J, GLU408J, GLU423K, GLU444K, GLU450K, GLU460J, GLU460K, GLU751J, GLU837J, GLY169J, GLY206K, GLY454K, GLY552K, GLY752J, GLY826K, GLY838K, GLY851J, HIS13K, HIS166J, HIS403J, HIS537K, HIS53K, HIS558K, HIS820J, HIS822J, LEU123K, LEU549K, LEU63K, LEU849J, LEU884J, LYS126K, LYS180J, LYS238K, LYS282J, LYS431K, LYS43K, LYS448K, LYS762J, LYS852J, LYS861J, PHE265J, PHE414J, PRO203K, PRO846J, SER116K, SER235K, SER24K, SER267J, SER39J, SER446K, SER641J, THR165J, THR405J, THR426K, THR48K, THR52K, THR57K, TYR11K, TYR120K, TYR841J, VAL167J, VAL428K
J-L -575.7646 -172.7302 123 ALA119J, ALA171L, ALA237J, ALA50J, ALA756L, ALA843L, ARG103J, ARG221J, ARG322J, ARG381J, ARG452J, ARG45J, ARG522L, ARG538J, ARG543J, ARG553J, ARG62J, ARG66J, ARG735L, ARG795L, ARG836J, ARG926L, ASN121J, ASN387J, ASN449J, ASN455L, ASN456L, ASN475J, ASN551J, ASN570L, ASN638L, ASN733L, ASN823L, ASN824L, ASP101J, ASP291J, ASP378J, ASP407L, ASP447J, ASP639L, ASP734L, ASP788L, ASP812L, ASP886L, ASP94L, GLN170J, GLN204J, GLN560J, GLN61J, GLN757L, GLN803L, GLN821L, GLN839L, GLU202J, GLU207J, GLU242J, GLU288J, GLU293J, GLU401L, GLU406L, GLU408L, GLU423J, GLU444J, GLU450J, GLU460J, GLU460L, GLU751L, GLU837L, GLY169L, GLY206J, GLY454J, GLY552J, GLY752L, GLY826J, GLY838J, GLY838L, GLY851L, HIS13J, HIS166L, HIS403L, HIS537J, HIS53J, HIS558J, HIS820L, HIS822L, LEU123J, LEU549J, LEU63J, LEU736L, LEU737L, LEU849L, LEU884L, LYS126J, LYS180L, LYS238J, LYS282L, LYS431J, LYS43J, LYS448J, LYS762L, LYS852L, LYS861L, PHE265L, PHE414L, PRO203J, PRO846L, SER116J, SER235J, SER24J, SER267L, SER446J, SER641L, THR165L, THR405L, THR426J, THR48J, THR57J, TYR11J, TYR120J, TYR233J, TYR841L, VAL167L, VAL428J
J-P -14.0514 43.3321 13 ARG59J, ARG93P, ASN635J, ASP58J, ASP636J, ASP89J, ASP94P, GLU82P, GLU98P, HIS623J, HIS898J, THR173P, TYR226P
J-Q 0.0 -3.7045 4 ASP107J, GLU58Q, LYS586J, LYS608J
J-R 0.0 11.0218 2 ASP123R, ASP749J
J-S -2.5946 0.0187 5 ARG125S, ASP123S, ASP807J, GLN119S, LYS811J
K-L -586.998 -165.5982 120 ALA119L, ALA171K, ALA237L, ALA50L, ALA756K, ALA843K, ALA883K, ARG103L, ARG221L, ARG322L, ARG381L, ARG452L, ARG522K, ARG538L, ARG543L, ARG553L, ARG62L, ARG66L, ARG735K, ARG795K, ARG836L, ARG926K, ASN121L, ASN387L, ASN42L, ASN449L, ASN455K, ASN455L, ASN456K, ASN475L, ASN551L, ASN570K, ASN638K, ASN733K, ASN823K, ASN824K, ASP101L, ASP291L, ASP378L, ASP407K, ASP639K, ASP734K, ASP788K, ASP812K, ASP886K, ASP94K, GLN560L, GLN61L, GLN757K, GLN778L, GLN803K, GLN839K, GLU202L, GLU207K, GLU207L, GLU242L, GLU288L, GLU293L, GLU401K, GLU406K, GLU408K, GLU423L, GLU444L, GLU450L, GLU460K, GLU460L, GLU751K, GLU837K, GLY169K, GLY206L, GLY454L, GLY552L, GLY752K, GLY826L, GLY838L, GLY851K, HIS13L, HIS166K, HIS403K, HIS537L, HIS53L, HIS558L, HIS820K, HIS822K, LEU123L, LEU549L, LEU63L, LEU849K, LEU884K, LYS126L, LYS180K, LYS238L, LYS282K, LYS431L, LYS43L, LYS448L, LYS762K, LYS852K, LYS861K, PHE265K, PHE414K, PRO203L, PRO846K, SER116L, SER235L, SER24L, SER267K, SER39K, SER446L, SER641K, THR165K, THR405K, THR426L, THR48L, THR57L, TYR11L, TYR120L, TYR841K, VAL167K, VAL428L
K-N 0.0 7.9616 2 ASP886K, GLU288N
K-O -27.7519 8.8873 18 ALA949K, ARG43O, ARG48O, ARG634K, ARG669K, ARG926K, ASN32O, ASN895K, ASP26O, ASP636K, ASP639K, GLU936K, HIS39O, HIS928K, HIS931K, ILE189O, TYR27O, TYR939K
K-P -18.3986 11.2769 18 ARG179P, ARG59K, ARG72P, ASN624K, ASP217P, ASP221P, ASP224P, ASP54K, ASP58K, GLN17K, GLN8K, GLU177P, GLU21K, HIS53K, HIS623K, LYS220P, PRO15P, PRO178P
L-N 0.0 39.0899 5 ASP289N, ASP54L, ASP58L, GLU288N, HIS53L
L-Q -42.1466 -12.8615 9 ARG18Q, ASP901L, GLU50Q, GLU751L, LYS745L, LYS861L, SER726L, THR859L, VAL52Q
M-N -22.1514 25.8029 8 ALA103N, ARG104N, ARG44M, ARG56M, ARG65N, ASN106N, LEU46M, THR49M
N-O -21.2163 23.0073 18 ARG193N, ARG233N, ARG53O, ASN199O, ASP221O, ASP271N, ASP89N, GLN194N, GLN211O, GLN58O, GLU179N, GLU190O, GLU294N, GLU57O, HIS207O, LYS220O, THR198N, TYR197O
Q-R -9.6667 8.5818 8 ALA95R, ARG96Q, GLU113Q, GLU113R, LEU131Q, LYS132Q, LYS132R, LYS99R
Q-S 0.0 -9.7584 3 ARG96Q, ARG96S, ASP97Q
Q-T -17.7472 -22.7027 6 ARG125Q, ASP123T, ASP97Q, LYS132Q, LYS132T, LYS99T
R-S -11.8331 -44.846 4 ARG125R, ASP108S, ASP97S, LYS132R
S-T 0.0 3.1461 4 ARG96S, ASP108T, LYS99S, LYS99T