3IYD
three-dimensional em structure of an intact activator-dependent transcription initiation complex
Total interactions analyzed 45
Total true interactions 17
Strongest Interaction Chains C-D
Int. Res. 592
Norm. En. per Res. -3.3329
Hub Node A(6)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -29.8374 -65.3356 -398.876 -494.049 160 26 20 19641 3 51 53
A-C -17.1042 29.7858 -308.733 -296.0514 179 14 8 13761 4 71 65
A-D 0.0 0.9889 -54.1285 -53.1396 37 2 2 2796 0 10 17
A-E 0.0 -5.9459 -17.9835 -23.9294 19 2 0 1093 0 10 8
A-F 0.0 -30.8121 -67.2721 -98.0842 36 4 0 2733 1 17 20
A-G 0.0 -2.7511 -72.3411 -75.0922 40 3 0 3248 0 11 14
B-C 0.0 -4.8756 -16.2601 -21.1357 20 0 0 979 0 14 13
B-D 0.0 -11.1509 -71.1453 -82.2961 89 1 1 4207 1 38 37
B-E 0.0 -6.6749 -13.1664 -19.8413 9 0 0 572 0 1 3
C-D -136.9694 -46.5592 -1789.56 -1973.0886 592 96 45 75538 7 185 185
C-E -4.1589 -11.4338 -64.4173 -80.01 48 2 0 2873 2 13 11
C-F -9.0675 -46.1394 -235.927 -291.1339 139 9 5 11327 0 54 43
D-E -35.7623 -75.9733 -465.684 -577.4196 174 36 10 22375 6 80 87
D-F -25.7714 -107.5586 -376.825 -510.155 208 37 9 18430 4 90 60
E-F 0.0 16.5983 -6.8642 9.7341 18 0 0 587 0 6 8
E-H 0.0 0.0 -0.1377 -0.1377 4 0 0 47 0 5 2
G-H 0.0 -24.7194 -303.84 -328.5594 139 14 15 14685 0 32 27