3IVK

crystal structure of the catalytic core of an rna polymerase ribozyme complexed with an antigen binding antibody fragment

• Total interactions analyzed: 15
• Total true interactions: 5
• Strongest Interaction:
  • Chains: B-A
  • Int. Res.: 210
  • Norm. En. per Res.: -2.6189
• Hub Node: L(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
L-H	-31.6881	9.6129	-522.938	-545.0132	210	10	13	20627	0	19	20
L-B	0.0	20.2762	-12.0918	8.1844	19	2	2	830	0	16	18
H-A	0.0	4.331	-10.7968	-6.4658	21	4	0	776	0	4	4
B-A	-33.3556	9.5185	-526.122	-549.9591	210	7	13	20711	0	19	20
A-C	0.0	0.0	1022.82	1022.82	2	48	0	359	0	0	0

Interface residues

• L-H: ALA100H, ALA131L, ALA137H, ALA148H, ALA149H, ALA180H, ALA194L, ALA33L, ALA35L, ALA44L, ALA52H, ALA52L, ALA64H, ARG101H, ARG105H, ARG106H, ARG107H, ARG110H, ARG143L, ARG41H, ASN138L, ASN139L, ASN211L, ASP113H, ASP123L, ASP156H, ASP168L, ASP171L, ASP2L, ASP65H, CYS135L, CYS152H, CYS89L, CYS99H, GLN101L, GLN102H, GLN117H, GLN125L, GLN161L, GLN183H, GLN38L, GLN39L, GLN42H, GLN90L, GLN91L, GLU124L, GLU162L, GLU166L, GLU49H, GLU9H, GLY100L, GLY102L, GLY103H, GLY109H, GLY111H, GLY116H, GLY118H, GLY129L, GLY145H, GLY151H, GLY174H, GLY186H, GLY213L, GLY42L, GLY45H, GLY47H, GLY58L, HIS176H, HIS38H, ILE118L, ILE37H, ILE49L, ILE54H, LEU126L, LEU136H, LEU136L, LEU137L, LEU150H, LEU153H, LEU176L, LEU180L, LEU182H, LEU182L, LEU187H, LEU190H, LEU47L, LEU48H, LEU48L, LEU55L, LYS127L, LYS129H, LYS141H, LYS155H, LYS170L, LYS208L, LYS221H, LYS226H, LYS40L, LYS43L, LYS46H, LYS46L, LYS68H, PHE112H, PHE117L, PHE119L, PHE134H, PHE140L, PHE178H, PHE210L, PHE95L, PHE99L, PRO120L, PRO121L, PRO135H, PRO138H, PRO179H, PRO41L, PRO45L, PRO56H, PRO96L, SER108H, SER115L, SER122L, SER128L, SER132H, SER132L, SER139H, SER140H, SER142H, SER144H, SER160L, SER163L, SER169L, SER173H, SER175L, SER177L, SER178L, SER184H, SER185H, SER189H, SER191H, SER192H, SER1L, SER209L, SER31L, SER32L, SER36H, SER51L, SER53H, SER54L, SER55H, SER57L, SER60H, SER66H, SER92L, SER94L, SER97L, THR130L, THR143H, THR147H, THR165L, THR172H, THR173L, THR177H, THR179L, THR181L, THR195H, THR207L, THR61H, THR86L, THR98L, TRP115H, TRP36L, TRP39H, TRP50H, TYR104H, TYR114H, TYR174L, TYR188H, TYR193L, TYR37L, TYR50L, TYR56L, TYR62H, TYR63H, TYR87L, TYR88L, TYR93L, TYR98H, VAL116L, VAL133H, VAL133L, VAL134L, VAL154H, VAL164L, VAL175H, VAL181H, VAL192L, VAL193H, VAL194H, VAL196H, VAL219H, VAL223H, VAL30L, VAL34L, VAL40H, VAL51H, VAL59L, VAL67H, VAL96H
• L-B: ALA154B, ALA154L, ALA185B, ALA185L, ASP152B, ASP152L, ASP186B, ASP186L, GLN156B, GLN156L, GLU188L, HIS190B, HIS190L, LYS189B, LYS189L, SER183B, SER183L, VAL151B, VAL151L
• H-A: ARG70A, ARG70H, ARG90A, ARG90H, ASN87A, ASN87H, GLN16A, GLN16H, GLY18A, GLY18H, GLY19A, GLY19H, GLY69A, GLY69H, LEU89A, LEU89H, PRO17A, PRO17H, SER20H, SER88A, SER88H
• B-A: ALA100A, ALA131B, ALA137A, ALA148A, ALA149A, ALA180A, ALA194B, ALA33B, ALA35B, ALA44B, ALA52A, ALA52B, ALA64A, ARG101A, ARG105A, ARG106A, ARG107A, ARG110A, ARG143B, ARG41A, ASN138B, ASN139B, ASN211B, ASP113A, ASP123B, ASP156A, ASP168B, ASP171B, ASP2B, ASP65A, CYS135B, CYS152A, CYS89B, CYS99A, GLN101B, GLN102A, GLN117A, GLN125B, GLN161B, GLN183A, GLN38B, GLN39B, GLN42A, GLN90B, GLN91B, GLU124B, GLU162B, GLU166B, GLU49A, GLU9A, GLY100B, GLY102B, GLY103A, GLY109A, GLY111A, GLY116A, GLY118A, GLY129B, GLY145A, GLY151A, GLY174A, GLY186A, GLY213B, GLY42B, GLY47A, GLY58B, HIS176A, HIS38A, ILE118B, ILE37A, ILE49B, ILE54A, LEU126B, LEU136A, LEU136B, LEU137B, LEU150A, LEU153A, LEU176B, LEU180B, LEU182A, LEU182B, LEU187A, LEU190A, LEU47B, LEU48A, LEU48B, LEU55B, LYS127B, LYS141A, LYS155A, LYS170B, LYS208B, LYS221A, LYS226A, LYS40B, LYS43B, LYS46A, LYS46B, LYS68A, PHE112A, PHE117B, PHE119B, PHE134A, PHE140B, PHE178A, PHE210B, PHE95B, PHE99B, PRO120B, PRO121B, PRO135A, PRO138A, PRO179A, PRO41B, PRO45B, PRO56A, PRO96B, SER108A, SER115B, SER122B, SER128B, SER132A, SER132B, SER139A, SER140A, SER142A, SER144A, SER160B, SER163B, SER169B, SER173A, SER175B, SER177B, SER178B, SER184A, SER185A, SER189A, SER191A, SER192A, SER1B, SER209B, SER31B, SER32B, SER36A, SER51B, SER53A, SER54B, SER55A, SER57B, SER60A, SER66A, SER92B, SER94B, SER97B, THR130B, THR143A, THR147A, THR165B, THR172A, THR173B, THR177A, THR179B, THR181B, THR195A, THR207B, THR61A, THR86B, THR98B, TRP115A, TRP36B, TRP39A, TRP50A, TYR104A, TYR114A, TYR174B, TYR187B, TYR188A, TYR193B, TYR37B, TYR50B, TYR56B, TYR62A, TYR63A, TYR87B, TYR88B, TYR93B, TYR98A, VAL116B, VAL133A, VAL133B, VAL134B, VAL154A, VAL164B, VAL175A, VAL181A, VAL192B, VAL193A, VAL194A, VAL196A, VAL219A, VAL223A, VAL30B, VAL34B, VAL40A, VAL51A, VAL59B, VAL5A, VAL67A, VAL96A
• A-C: B0A0A, B0C0C