3ID5

crystal structure of sulfolobus solfataricus c/d rnp assembled with nop5, fibrillarin, l7ae and a split half c/d rna

• Total interactions analyzed: 28
• Total true interactions: 8
• Strongest Interaction:
  • Chains: A-E
  • Int. Res.: 142
  • Norm. En. per Res.: -3.8701
• Hub Node: A(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-39.8663	3.0818	-439.987	-476.7715	162	27	9	19062	2	48	52
A-C	-2.2711	-4.6705	-112.858	-119.7997	61	10	2	5519	1	20	16
A-E	-24.5429	-123.5411	-401.473	-549.557	142	20	14	16588	8	47	45
A-F	-7.6619	-48.4737	-86.1058	-142.2413	38	9	0	2940	3	14	9
B-E	-4.9472	-45.2304	-65.8913	-116.0689	35	4	0	2617	2	13	9
B-F	0.0	-33.7129	-24.3802	-58.093	27	1	0	1186	0	11	9
E-F	-41.3703	8.0563	-454.984	-488.298	168	43	9	20307	1	50	55
E-G	0.0	3.5315	-95.2572	-91.7257	55	9	2	4900	0	17	16

Interface residues

• A-B: ALA104B, ALA121B, ALA132A, ALA132B, ALA133A, ALA167B, ALA69A, ARG112B, ARG115B, ARG123B, ARG124B, ARG126A, ARG127A, ARG130A, ARG136A, ARG188A, ARG247A, ARG248A, ARG91A, ARG94A, ASN101B, ASN115A, ASN126B, ASN146B, ASN166B, ASN174B, ASN207B, ASN245A, ASN249A, ASN251A, ASN252A, ASN28A, ASN35B, ASN37B, ASN42A, ASN67A, ASP133B, ASP148B, ASP242A, GLN122B, GLN138B, GLU108B, GLU110A, GLU111A, GLU116B, GLU119A, GLU123A, GLU145B, GLU202A, GLU255A, GLU260A, GLU43A, GLU47B, GLU66A, GLU68A, GLU70A, GLU84A, GLU8A, GLU95A, GLY102B, GLY106B, GLY12A, GLY175B, GLY256A, GLY40B, GLY48B, HIS118A, HIS9A, ILE11A, ILE127B, ILE164B, ILE246A, ILE35A, ILE7A, ILE92A, LEU100B, LEU117A, LEU117B, LEU118B, LEU119B, LEU120A, LEU122A, LEU129A, LEU130B, LEU131B, LEU139A, LEU171B, LEU203A, LEU241A, LEU250A, LEU254A, LEU39A, LEU40A, LEU43B, LEU6A, LEU97A, LYS103B, LYS128A, LYS135A, LYS141B, LYS168B, LYS172B, LYS231B, LYS259A, LYS45B, LYS79B, LYS88A, LYS99A, MET258A, PHE109B, PHE116A, PHE128B, PHE136B, PHE169B, PHE170B, PHE36B, PHE48A, PHE93A, PRO111B, PRO125B, PRO129B, PRO137B, PRO271A, PRO85A, PRO98A, SER110B, SER121A, SER139B, SER142B, SER87A, SER90A, SER96A, THR125A, THR266A, THR36A, TYR105B, TYR113A, TYR114A, TYR124A, TYR140B, TYR165B, TYR230B, TYR244A, TYR253A, TYR39B, TYR83A, TYR86A, VAL100A, VAL107B, VAL10A, VAL113B, VAL114B, VAL120B, VAL143B, VAL144B, VAL147B, VAL173B, VAL257A, VAL33B, VAL38B, VAL65A, VAL89A
• A-C: ALA100C, ALA288A, ALA292A, ALA342A, ALA343A, ALA346A, ALA348A, ALA349A, ALA353A, ALA45C, ALA67C, ARG350A, ARG357A, ARG48C, ASN264A, ASN40C, ASP285A, ASP352A, CYS73C, GLN296A, GLN362A, GLN366A, GLN61C, GLU286A, GLU41C, GLU47C, GLU63C, GLU64C, GLU75C, GLY356A, HIS68C, ILE295A, ILE347A, ILE359A, ILE65C, LEU363A, LEU69C, LEU71C, LEU72C, LYS11C, LYS289A, LYS344A, LYS44C, LYS76C, MET290A, PHE354A, PRO291A, PRO62C, SER101C, SER293A, SER355A, SER8C, THR294A, THR39C, THR42C, THR43C, TYR9C, VAL297A, VAL351A, VAL46C, VAL66C
• A-E: ALA133A, ALA133E, ALA140A, ALA140E, ALA143A, ALA143E, ALA146A, ALA146E, ALA223A, ALA223E, ALA232A, ALA232E, ALA237A, ALA237E, ARG136A, ARG136E, ARG145A, ARG145E, ARG160A, ARG160E, ARG162A, ARG162E, ARG234A, ARG234E, ARG247A, ARG247E, ARG248A, ARG248E, ASN238A, ASN238E, ASN245A, ASN245E, ASN249A, ASN249E, ASN251A, ASN251E, ASP137A, ASP137E, ASP148A, ASP148E, ASP149A, ASP149E, ASP151A, ASP151E, ASP224A, ASP224E, ASP228A, ASP228E, ASP229A, ASP229E, ASP242A, ASP242E, GLN134A, GLN134E, GLN142A, GLN142E, GLU159A, GLU159E, GLU163A, GLU163E, GLU227A, GLU227E, GLU260A, GLU260E, GLY222A, GLY222E, GLY256A, GLY256E, HIS168A, HIS168E, ILE141A, ILE141E, ILE150A, ILE150E, ILE154A, ILE154E, ILE167A, ILE167E, ILE221A, ILE221E, ILE225A, ILE225E, ILE236A, ILE236E, ILE240A, ILE240E, ILE246A, ILE246E, LEU129A, LEU129E, LEU138A, LEU138E, LEU139A, LEU139E, LEU156A, LEU156E, LEU161A, LEU161E, LEU230A, LEU230E, LEU243A, LEU243E, LEU250A, LEU250E, LEU254A, LEU254E, LYS135A, LYS135E, LYS152A, LYS152E, MET147A, MET147E, MET233A, MET233E, MET235A, MET235E, PHE157A, PHE157E, PRO170A, PRO170E, SER166A, SER166E, SER226A, SER226E, SER231A, SER231E, SER279A, SER279E, THR153A, THR153E, THR239A, THR239E, TRP164A, TRP164E, TYR165A, TYR165E, TYR253A, TYR253E, VAL144A, VAL144E, VAL257A, VAL257E
• A-F: ALA232A, ALA237A, ARG112F, ARG115F, ARG234A, ARG58F, ASN238A, ASN37F, ASP191A, ASP224A, ASP228A, ASP229A, ASP242A, GLN122F, GLU116F, GLU227A, GLY40F, HIS168A, ILE225A, ILE236A, LEU117F, LEU118F, LEU119F, LEU230A, MET233A, MET235A, PHE194A, PRO111F, SER110F, SER187A, SER226A, SER231A, SER87F, THR239A, TYR39F, VAL113F, VAL114F, VAL38F
• B-E: ALA232E, ALA237E, ARG112B, ARG115B, ARG234E, ARG58B, ASN238E, ASP191E, ASP224E, ASP228E, ASP229E, ASP242E, GLN122B, GLU116B, GLU227E, GLY40B, ILE225E, ILE236E, LEU117B, LEU118B, LEU119B, LEU230E, MET235E, PHE194E, PRO111B, SER110B, SER187E, SER226E, SER231E, SER87B, THR239E, TYR39B, VAL113B, VAL114B, VAL38B
• B-F: ALA56B, ALA56F, ARG26B, ARG26F, ARG42B, ARG42F, ARG58B, ARG58F, ASN21B, ASN21F, ASN55B, ASN55F, ASP22B, ASP22F, GLY23B, GLY23F, PHE20B, PHE20F, PHE25F, PHE57B, PHE57F, PRO218B, PRO218F, SER24B, SER24F, TYR219B, TYR219F
• E-F: ALA104F, ALA121F, ALA132E, ALA132F, ALA133E, ALA167F, ALA69E, ARG112F, ARG115F, ARG123F, ARG124F, ARG126E, ARG127E, ARG130E, ARG136E, ARG188E, ARG247E, ARG248E, ARG42F, ARG91E, ARG94E, ASN101F, ASN115E, ASN126F, ASN146F, ASN166F, ASN174F, ASN207F, ASN245E, ASN249E, ASN251E, ASN252E, ASN28E, ASN35F, ASN37F, ASN42E, ASN67E, ASP133F, ASP242E, GLN122F, GLN138F, GLU108F, GLU110E, GLU111E, GLU116F, GLU119E, GLU123E, GLU145F, GLU202E, GLU255E, GLU260E, GLU41F, GLU43E, GLU47F, GLU66E, GLU68E, GLU70E, GLU84E, GLU8E, GLU95E, GLY102F, GLY106F, GLY12E, GLY175F, GLY204E, GLY256E, GLY40F, GLY48F, HIS118E, HIS9E, ILE11E, ILE127F, ILE164F, ILE246E, ILE35E, ILE44F, ILE7E, ILE92E, LEU100F, LEU117E, LEU117F, LEU118F, LEU119F, LEU120E, LEU122E, LEU129E, LEU130F, LEU131F, LEU139E, LEU171F, LEU203E, LEU241E, LEU243E, LEU250E, LEU254E, LEU39E, LEU43F, LEU6E, LEU97E, LYS103F, LYS128E, LYS135E, LYS141F, LYS168F, LYS172F, LYS201E, LYS231F, LYS259E, LYS45F, LYS79F, LYS88E, LYS99E, MET258E, PHE109F, PHE116E, PHE128F, PHE136F, PHE169F, PHE170F, PHE36F, PHE48E, PHE93E, PRO111F, PRO125F, PRO129F, PRO137F, PRO271E, PRO85E, PRO98E, SER110F, SER121E, SER139F, SER142F, SER87E, SER90E, SER96E, THR125E, THR266E, THR36E, TYR105F, TYR113E, TYR114E, TYR124E, TYR140F, TYR165F, TYR230F, TYR244E, TYR253E, TYR39F, TYR46F, TYR83E, TYR86E, VAL100E, VAL107F, VAL10E, VAL113F, VAL114F, VAL120F, VAL143F, VAL144F, VAL147F, VAL173F, VAL257E, VAL261E, VAL33F, VAL38F, VAL65E, VAL89E
• E-G: ALA100G, ALA288E, ALA292E, ALA342E, ALA343E, ALA346E, ALA348E, ALA349E, ALA353E, ALA45G, ALA67G, ARG350E, ARG357E, ARG48G, ASN264E, ASN40G, ASP285E, ASP352E, GLN296E, GLN362E, GLN366E, GLN61G, GLU41G, GLU47G, GLU63G, GLU64G, GLU75G, GLY356E, HIS68G, ILE295E, ILE347E, ILE359E, ILE65G, LEU363E, LEU69G, LEU71G, LEU72G, LYS289E, LYS44G, MET290E, PHE354E, PRO291E, PRO62G, SER101G, SER293E, SER355E, SER8G, THR294E, THR39G, THR42G, THR43G, TYR9G, VAL297E, VAL351E, VAL66G