3IBC

crystal structure of caspase-7 incomplex with acetyl-yvad- cho

• Total interactions analyzed: 15
• Total true interactions: 10
• Strongest Interaction:
  • Chains: C-D
  • Int. Res.: 165
  • Norm. En. per Res.: -5.4421
• Hub Node: A(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-171.5113	-17.5757	-690.18	-879.267	167	39	14	24532	1	40	30
A-C	0.0	13.0834	-49.9371	-36.8537	37	9	2	2665	1	20	12
A-D	-23.685	14.8628	-85.2648	-94.087	42	6	2	2946	1	8	10
A-E	-10.2767	-36.3865	-22.4965	-69.1597	26	11	0	1119	3	6	7
B-C	-39.2352	14.8068	-84.1625	-108.5908	43	6	2	2993	1	8	10
B-D	-65.643	-58.8466	-368.441	-492.9306	109	26	8	15266	4	32	35
B-E	-24.4405	-28.0812	-100.562	-153.0837	31	6	1	3571	1	3	0
C-D	-188.4069	-24.0298	-685.511	-897.9477	165	38	16	24641	1	40	29
C-F	-2.1437	-37.5483	-9.3461	-49.0381	27	12	0	1064	2	6	6
D-F	-31.2559	-26.3135	-98.0883	-155.6577	30	10	1	3760	1	3	0

Interface residues

• A-B: ALA135A, ALA138A, ALA164A, ALA185A, ALA217B, ALA222B, ALA94A, ALA96A, ARG102A, ARG167A, ARG170A, ARG187A, ARG233B, ARG237B, ARG271B, ARG87A, ASN148A, ASN61A, ASN63A, ASN75A, ASN88A, ASP169A, ASP192A, ASP193A, ASP218B, ASP255B, ASP279B, ASP91A, ASP93A, CYS100A, CYS136A, CYS139A, CYS171A, CYS186A, CYS246B, CYS290B, GLN184A, GLN196A, GLN243B, GLN287B, GLN303B, GLN59A, GLU146A, GLU147A, GLU176A, GLU190A, GLU216B, GLU250B, GLU251B, GLU257B, GLU274B, GLU284B, GLU298B, GLU95A, GLY105A, GLY145A, GLY168A, GLY188A, GLY194A, GLY228B, GLY236B, GLY238B, GLY253B, GLY68A, GLY85A, GLY89A, HIS144A, HIS165A, HIS252B, HIS281B, HIS283B, ILE140A, ILE150A, ILE159A, ILE183A, ILE195A, ILE213B, ILE248B, ILE258B, ILE261B, ILE288B, LEU104A, LEU123A, LEU141A, LEU142A, LEU162A, LEU174A, LEU175A, LEU180A, LEU191A, LEU220B, LEU245B, LEU249B, LEU256B, LEU262B, LEU295B, LEU299B, LEU67A, LEU97A, LYS160A, LYS172A, LYS177A, LYS179A, LYS212B, LYS254B, LYS285B, LYS286B, LYS297B, LYS76A, LYS92A, LYS99A, MET294B, MET62A, MET84A, PHE101A, PHE106A, PHE137A, PHE166A, PHE181A, PHE182A, PHE219B, PHE221B, PHE241B, PHE282B, PHE301B, PHE64A, PHE78A, PHE98A, PRO178A, PRO214B, PRO227B, PRO235B, PRO280B, PRO289B, SER103A, SER143A, SER224B, SER231B, SER234B, SER239B, SER247B, SER275B, SER277B, SER293B, SER302B, THR163A, THR189A, THR225B, THR296B, THR57A, THR90A, TRP232B, TRP240B, TYR223B, TYR229B, TYR230B, TYR300B, TYR58A, TYR60A, VAL149A, VAL215B, VAL226B, VAL242B, VAL265B, VAL291B, VAL292B, VAL86A
• A-C: ARG167A, ARG170A, ARG467C, ARG470C, ARG487C, ASN148A, ASN448C, ASP169A, ASP192A, ASP193A, ASP469C, ASP492C, ASP493C, CYS171A, CYS471C, GLN196A, GLN496C, GLU147A, GLU176A, GLU190A, GLU447C, GLU476C, GLU490C, GLY168A, GLY194A, GLY468C, GLY494C, ILE195A, ILE495C, LEU175A, LEU191A, LEU475C, LEU491C, LYS160A, LYS172A, LYS460C, LYS472C
• A-D: ALA517D, ARG167A, ARG170A, ARG187A, ARG564D, ARG568D, ARG571D, ASN148A, ASN566D, ASP169A, ASP192A, ASP193A, ASP567D, GLN196A, GLN560D, GLN59A, GLU176A, GLU190A, GLU516D, GLU551D, GLY194A, GLY528D, HIS552D, ILE195A, ILE513D, ILE548D, LEU191A, LEU556D, LYS160A, LYS512D, MET594D, PRO514D, PRO527D, THR563D, THR57A, TYR511D, TYR529D, TYR58A, TYR60A, VAL515D, VAL526D, VAL592D
• A-E: ALA185A, ALA704E, ARG187A, ARG87A, ASN88A, ASP705E, ASP93A, CYS186A, GLN184A, GLU146A, GLY145A, GLY188A, GLY85A, HIS144A, ILE150A, ILE183A, LEU142A, LEU191A, MET84A, PHE78A, SER143A, THR189A, THR90A, TYR151A, VAL703E, VAL86A
• B-C: ALA217B, ARG264B, ARG268B, ARG271B, ARG467C, ARG470C, ARG487C, ASN266B, ASN448C, ASP267B, ASP469C, ASP492C, ASP493C, GLN260B, GLN359C, GLN496C, GLU216B, GLU251B, GLU476C, GLU490C, GLY228B, GLY494C, HIS252B, ILE213B, ILE248B, ILE288B, ILE495C, LEU256B, LEU475C, LEU491C, LYS212B, LYS460C, MET294B, PRO214B, PRO227B, THR263B, THR357C, TYR229B, TYR358C, TYR360C, VAL215B, VAL226B, VAL292B
• B-D: ALA217B, ALA270B, ALA517D, ALA570D, ARG264B, ARG268B, ARG271B, ARG564D, ARG568D, ARG571D, ASN266B, ASN566D, ASP218B, ASP267B, ASP518D, ASP567D, CYS290B, CYS590D, GLN260B, GLN276B, GLN287B, GLN560D, GLN587D, GLU216B, GLU257B, GLU274B, GLU284B, GLU298B, GLU516D, GLU557D, GLU574D, GLU584D, GLU598D, HIS272B, HIS283B, HIS572D, HIS583D, ILE213B, ILE258B, ILE261B, ILE288B, ILE513D, ILE558D, ILE588D, LEU220B, LEU256B, LEU262B, LEU295B, LEU299B, LEU520D, LEU556D, LEU562D, LEU595D, LEU599D, LYS212B, LYS285B, LYS286B, LYS297B, LYS512D, LYS585D, LYS586D, LYS597D, MET259B, MET294B, MET559D, MET594D, PHE219B, PHE221B, PHE273B, PHE519D, PHE521D, PHE573D, PRO214B, PRO227B, PRO289B, PRO514D, PRO527D, PRO589D, SER275B, SER293B, SER575D, SER593D, THR225B, THR263B, THR296B, THR525D, THR563D, THR596D, TRP240B, TRP540D, TYR223B, TYR229B, TYR300B, TYR511D, TYR523D, TYR529D, TYR600D, VAL215B, VAL226B, VAL265B, VAL269B, VAL291B, VAL292B, VAL515D, VAL526D, VAL565D, VAL569D, VAL591D, VAL592D
• B-E: ALA704E, ARG233B, ARG237B, ASP278B, ASP705E, GLN243B, GLN276B, GLN287B, GLU274B, GLU284B, GLY236B, GLY238B, HIS272B, HIS283B, LYS285B, PHE273B, PHE282B, PRO235B, SER224B, SER231B, SER234B, SER239B, SER275B, SER277B, THR225B, TRP232B, TRP240B, TYR229B, TYR230B, TYR702E, VAL703E
• C-D: ALA394C, ALA396C, ALA435C, ALA438C, ALA464C, ALA485C, ALA517D, ALA522D, ALA544D, ARG387C, ARG402C, ARG467C, ARG470C, ARG487C, ARG533D, ARG537D, ARG571D, ASN361C, ASN363C, ASN388C, ASN448C, ASP391C, ASP393C, ASP469C, ASP492C, ASP493C, ASP518D, ASP555D, ASP579D, CYS400C, CYS436C, CYS439C, CYS471C, CYS486C, CYS546D, CYS590D, GLN359C, GLN484C, GLN496C, GLN543D, GLN587D, GLN603D, GLU395C, GLU446C, GLU447C, GLU476C, GLU490C, GLU516D, GLU550D, GLU551D, GLU557D, GLU574D, GLU584D, GLU598D, GLY385C, GLY389C, GLY405C, GLY445C, GLY468C, GLY488C, GLY494C, GLY528D, GLY536D, GLY538D, GLY553D, HIS444C, HIS465C, HIS552D, HIS581D, HIS583D, ILE372C, ILE440C, ILE450C, ILE459C, ILE483C, ILE495C, ILE513D, ILE548D, ILE558D, ILE561D, ILE588D, LEU367C, LEU397C, LEU404C, LEU441C, LEU442C, LEU462C, LEU474C, LEU475C, LEU480C, LEU491C, LEU520D, LEU545D, LEU549D, LEU556D, LEU562D, LEU595D, LEU599D, LYS376C, LYS392C, LYS399C, LYS460C, LYS472C, LYS477C, LYS479C, LYS512D, LYS554D, LYS585D, LYS586D, LYS597D, MET362C, MET384C, MET594D, PHE364C, PHE378C, PHE398C, PHE401C, PHE406C, PHE437C, PHE466C, PHE481C, PHE482C, PHE519D, PHE521D, PHE541D, PHE582D, PHE601D, PRO478C, PRO514D, PRO527D, PRO535D, PRO580D, PRO589D, SER403C, SER443C, SER524D, SER531D, SER534D, SER539D, SER547D, SER575D, SER593D, SER602D, THR357C, THR390C, THR463C, THR489C, THR525D, THR596D, TRP532D, TRP540D, TYR358C, TYR360C, TYR523D, TYR529D, TYR530D, TYR600D, VAL386C, VAL449C, VAL515D, VAL526D, VAL542D, VAL565D, VAL591D, VAL592D
• C-F: ALA485C, ALA804F, ARG387C, ARG487C, ASN375C, ASN388C, ASP393C, ASP805F, CYS486C, GLN484C, GLU446C, GLU490C, GLY385C, GLY445C, GLY488C, HIS444C, ILE450C, LEU442C, LEU491C, MET384C, PHE378C, SER443C, THR390C, THR489C, TYR451C, VAL386C, VAL803F
• D-F: ALA804F, ARG533D, ARG537D, ASP805F, GLN543D, GLN576D, GLN587D, GLU574D, GLU584D, GLY536D, GLY538D, HIS572D, HIS583D, LYS585D, PHE573D, PHE582D, PRO535D, SER524D, SER531D, SER534D, SER539D, SER575D, SER577D, THR525D, TRP532D, TRP540D, TYR529D, TYR530D, TYR802F, VAL803F