3IAM
crystal structure of the hydrophilic domain of respiratory complex i from thermus thermophilus, reduced, 2 mol/asu, with bound nadh
Total interactions analyzed 120
Total true interactions 35
Strongest Interaction Chains 4-7
Int. Res. 29
Norm. En. per Res. -4.9678
Hub Node 3(5)
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Weak Strong
Width of edge <-> No. of inter. res.
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
1-2 -144.3359 -144.1769 -704.496 -993.0088 229 43 16 28084 13 79 77
1-3 -41.8383 -41.4884 -329.606 -412.9327 148 22 7 15371 5 47 55
1-7 0.0 3.1105 -22.2791 -19.1686 25 0 1 1257 0 3 16
2-3 -12.0049 68.6265 -155.25 -98.6284 58 6 0 5426 2 16 17
2-7 -37.9471 -58.8617 -143.174 -239.9828 83 13 8 7044 4 25 18
3-4 0.0 3.2693 -248.904 -245.6347 88 26 5 10634 1 20 21
3-5 -35.7158 -18.3868 -233.494 -287.5966 98 12 2 8848 4 26 26
3-9 -32.3232 -98.8618 -141.81 -272.995 59 11 1 5885 6 30 24
3-7 -32.5182 -7.8904 -230.145 -270.5536 92 17 4 9321 8 52 61
3-D 0.0 0.0 -2.8193 -2.8193 8 0 0 268 0 5 3
4-5 -210.2269 -44.3973 -732.023 -986.6472 236 55 15 30724 16 84 83
4-6 -21.3143 -38.5681 -267.627 -327.5094 110 14 5 11158 5 17 25
4-9 -40.5507 -48.9742 -267.602 -357.1269 98 7 5 10611 4 40 21
4-7 -15.0401 -57.1608 -71.8664 -144.0673 29 5 1 2780 3 9 13
5-6 -24.707 -4.8326 -81.7006 -111.2402 49 2 1 3472 0 12 5
5-9 -15.1076 -54.1935 -167.749 -237.0501 57 6 6 6330 7 12 12
6-9 -73.7996 -24.6111 -340.102 -438.5127 118 45 15 14594 3 35 42
9-7 -7.1335 28.5049 -93.8008 -72.4294 63 7 3 4627 0 22 24
A-B -131.2697 -142.4979 -714.89 -988.6576 230 38 16 28148 15 78 77
A-C -40.3079 -39.6553 -328.751 -408.7142 147 18 7 15351 5 48 55
A-H 0.0 3.0196 -21.4086 -18.389 24 0 1 1213 0 3 16
B-C -20.3305 68.144 -152.39 -104.5765 58 9 0 5482 2 16 17
B-H -38.3317 -58.9222 -143.809 -241.0629 82 11 8 7070 4 25 18
C-D 0.0 3.6018 -253.959 -250.3572 89 32 5 10756 1 20 21
C-E -34.013 -21.3794 -242.746 -298.1384 99 13 2 9020 4 26 27
C-G -34.1977 -87.9802 -145.911 -268.0889 61 10 1 5999 6 30 24
C-H -26.8786 -9.5521 -225.689 -262.1197 91 17 4 9377 8 52 61
D-E -187.7776 -62.5526 -727.539 -977.8692 236 58 15 30644 16 83 84
D-F -14.0496 -37.3847 -260.525 -311.9593 108 12 5 10886 4 17 24
D-G -45.2771 -49.2557 -273.569 -368.1018 99 9 5 10749 4 41 21
D-H -13.206 -55.1087 -72.1179 -140.4325 29 6 1 2816 3 10 13
E-F -22.5497 -4.7482 -76.418 -103.716 50 2 1 3370 0 12 5
E-G -14.2855 -53.2063 -169.44 -236.9318 57 7 6 6353 6 12 12
F-G -79.5799 -15.4009 -357.399 -452.3799 118 59 15 15042 3 37 44
G-H -9.074 29.5201 -104.399 -83.9529 63 7 3 4874 0 24 25