3I9V
crystal structure of the hydrophilic domain of respiratory complex i from thermus thermophilus, oxidized, 2 mol/asu
Total interactions analyzed 120
Total true interactions 35
Strongest Interaction Chains C-G
Int. Res. 61
Norm. En. per Res. -4.6972
Hub Node 3(5)
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Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
1-2 -136.6804 -116.3387 -720.171 -973.1901 228 55 16 28647 13 77 78
1-3 -30.833 -50.2284 -374.463 -455.5245 151 13 7 16246 4 46 55
1-7 0.0 0.832 -19.1447 -18.3127 28 0 1 1153 0 3 17
2-3 -21.6237 61.5915 -156.469 -116.5012 60 15 0 5606 1 14 19
2-7 -25.9516 -57.7682 -154.52 -238.2398 82 12 6 7325 3 27 19
3-4 -13.112 3.707 -269.023 -278.428 91 24 5 10936 2 24 21
3-5 -59.9366 -11.9149 -251.572 -323.4235 101 17 2 9214 3 28 26
3-9 -14.9655 -87.5211 -146.765 -249.2516 59 9 1 5848 6 30 24
3-7 -49.4952 -42.8068 -208.371 -300.673 90 21 4 8919 12 50 60
3-D 0.0 0.0 -1.4578 -1.4578 8 0 0 167 1 5 2
4-5 -216.3273 -39.3931 -795.438 -1051.1583 236 53 16 30832 17 87 82
4-6 -43.2337 -36.9874 -275.067 -355.2882 107 24 4 11613 6 18 25
4-9 -32.2745 -51.4695 -247.386 -331.13 101 9 4 10429 2 41 20
4-7 -4.6934 -30.3524 -69.4861 -104.5319 27 3 1 2604 3 9 13
5-6 -25.3697 -5.1574 -78.4038 -108.9309 47 2 1 3547 0 14 5
5-9 -12.9757 -54.0253 -163.972 -230.973 57 10 6 6388 7 12 11
6-9 -41.5546 -20.3446 -340.914 -402.8133 122 50 14 14819 2 34 40
9-7 -3.9732 27.1323 -102.666 -79.5069 62 2 3 4795 0 23 22
A-B -122.506 -118.8594 -744.061 -985.4264 228 48 15 28578 13 77 76
A-C -30.9421 -47.7142 -319.373 -398.0293 146 13 7 15037 4 43 53
A-H 0.0 0.7751 -18.5441 -17.769 27 0 1 1117 0 3 16
B-C -15.978 61.042 -142.259 -97.195 59 11 0 5355 1 14 18
B-H -26.37 -58.3862 -151.783 -236.5392 81 10 7 7219 3 27 19
C-D -13.4728 3.2338 -274.771 -285.0099 92 29 5 11047 2 24 22
C-E -60.0634 -10.7858 -232.225 -303.0741 100 14 2 8941 3 28 26
C-G -22.7982 -90.284 -173.447 -286.5292 61 14 1 6316 7 31 26
C-H -49.396 -37.1351 -218.66 -305.1911 89 23 4 9141 11 49 59
D-E -221.3592 -44.2107 -806.476 -1072.0458 238 61 16 31225 18 86 82
D-F -28.621 -34.5675 -268.084 -331.2725 107 21 4 11401 6 18 25
D-G -33.4002 -50.864 -256.773 -341.0372 102 11 4 10593 2 42 21
D-H -6.808 -31.1465 -73.4743 -111.4288 29 2 1 2697 3 9 13
E-F -17.5345 -5.2334 -78.8277 -101.5957 47 2 1 3519 0 13 5
E-G -14.8307 -57.8545 -164.706 -237.3912 57 13 6 6465 6 12 11
F-G -43.2409 -7.2433 -346.683 -397.1671 123 48 14 14721 2 35 40
G-H -4.0751 26.5759 -98.078 -75.5772 62 2 3 4616 0 23 22