3I9D
initiation complex of 70s ribosome with two trnas and mrna. this entry 3i9d contains 30s ribosomal subunit of molecule a. the 50s ribosomal subunit can be found in pdb entry 3i9e. molecule b in the same asymmetric unit is deposited as 3i9b (30s) and 3i9c (50s)
Total interactions analyzed 351
Total true interactions 25
Strongest Interaction Chains M-Q
Int. Res. 53
Norm. En. per Res. -5.0911
Hub Node F(4)
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Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
E-F 0.0 0.0 -0.0017 -0.0017 2 0 0 1 0 1 1
E-H 0.0 0.0 -0.0419 -0.0419 8 0 0 28 0 0 3
E-K -12.8089 -35.0412 -57.0598 -104.9098 33 17 0 2636 1 16 16
F-G 0.0 2.3057 -2.0593 0.2464 6 0 0 229 0 0 8
F-H 0.0 -19.3695 -10.8845 -30.254 16 0 0 687 0 5 5
F-M 0.0 5.3147 -63.4009 -58.0862 55 1 2 3029 0 14 25
F-Q -12.5595 7.6845 -190.801 -195.6759 78 23 3 8596 0 17 39
G-H -2.6897 -29.5635 -47.1896 -79.4428 43 2 0 2165 1 5 9
H-K -4.9785 -8.465 -130.701 -144.1446 60 9 2 6160 2 44 41
I-R 0.0 0.0 -1.0951 -1.0951 3 0 0 109 0 2 1
I-U -41.4156 -46.1214 -239.568 -327.105 80 49 9 10340 3 13 21
J-L 0.0 2.4023 -37.3787 -34.9764 40 6 4 2352 0 6 8
J-N 0.0 0.0 -51.8216 -51.8216 26 2 3 2182 0 2 6
J-P 0.0 0.0 -0.0006 -0.0006 2 0 0 2 0 0 0
K-O 0.0 0.0 -9.0234 -9.0234 9 0 0 476 0 0 1
K-T 0.0 2.4677 -31.4193 -28.9516 15 0 0 1303 0 2 8
L-M 0.0 0.0 -18.1002 -18.1002 19 6 0 1131 0 9 16
L-Q 0.0 0.0 -12.2851 -12.2851 9 1 0 502 0 0 0
M-Q -44.2574 -37.5714 -188.002 -269.8308 53 28 6 8118 3 14 34
N-U -18.6056 -4.0812 -82.4452 -105.132 36 11 2 3669 0 14 18
O-T 0.0 0.0 -37.6811 -37.6811 22 5 4 1987 0 0 8
P-V -8.5016 -2.3681 -59.7282 -70.5979 45 4 0 2913 0 8 26
P-X 0.0 1.1733 -3.3323 -2.1591 13 0 0 464 0 3 9
Q-V 0.0 0.0 -0.24 -0.24 3 0 0 48 0 0 0
R-T 0.0 -1.2336 -0.0841 -1.3177 12 0 0 49 0 8 6