3I9C

initiation complex of 70s ribosome with two trnas and mrna. this entry 3i9c contains 50s ribosomal subunit of molecule b. the 30s ribosomal subunit can be found in pdb entry 3i9b. molecule a in the same asymmetric unit is deposited as 3i9d (30s) and 3i9e (50s)

• Total interactions analyzed: 435
• Total true interactions: 27
• Strongest Interaction:
  • Chains: N-R
  • Int. Res.: 78
  • Norm. En. per Res.: -4.405
• Hub Node: E(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
E-M	0.0	0.0	-33.5576	-33.5576	14	0	0	1243	0	0	2
E-N	-8.3616	5.1879	-23.1014	-26.2751	13	1	0	1001	0	8	7
E-0	-8.5633	5.1328	-18.5255	-21.956	16	4	0	1242	0	0	11
E-R	0.0	-12.038	-113.582	-125.62	75	18	4	6874	2	19	16
F-O	0.0	-1.538	-106.525	-108.063	48	14	3	5010	0	14	13
F-1	0.0	0.0	-1.0627	-1.0627	10	0	0	270	0	0	2
F-7	0.0	0.0	-0.0014	-0.0014	2	0	0	1	0	0	0
G-4	-7.059	22.9185	-205.951	-190.0915	107	39	3	11331	0	26	26
K-Z	0.0	0.0	-32.8779	-32.8779	31	3	1	1831	0	4	9
M-1	-6.1155	-6.1677	-117.567	-129.8502	48	5	1	5284	0	5	23
M-2	0.0	0.0	-11.916	-11.916	12	0	0	835	0	1	4
N-R	-55.733	-60.5752	-227.28	-343.5881	78	18	5	9386	4	37	39
O-1	0.0	0.0	-0.0174	-0.0174	3	0	0	10	0	0	2
O-2	0.0	0.0	-6.8993	-6.8993	14	0	0	560	0	0	3
O-8	-6.4018	35.7337	-166.37	-137.0381	59	28	2	8318	0	15	54
P-V	-20.3901	-0.6207	-171.517	-192.5278	99	56	6	9653	2	44	47
P-3	0.0	0.0	-10.1089	-10.1089	17	2	0	790	0	0	5
0-S	-16.1207	5.8661	-16.592	-26.8466	19	2	0	822	0	4	9
0-5	-11.7357	18.4114	-77.0688	-70.3931	33	12	4	3686	1	7	14
Q-3	0.0	12.18	-12.1598	0.0202	21	7	0	756	0	9	15
1-2	-18.11	-35.3948	-206.829	-260.3337	92	43	11	10417	1	17	34
1-5	0.0	4.9215	-7.5108	-2.5893	13	1	0	626	0	0	9
S-5	0.0	40.441	-71.4478	-31.0068	53	5	4	4455	0	13	20
T-W	-15.3039	-16.8463	-109.697	-141.8472	46	7	2	4621	2	8	10
T-7	0.0	0.0	-1.3389	-1.3389	7	0	0	149	0	2	9
3-8	0.0	0.0	-0.0409	-0.0409	2	0	0	20	0	1	1
6-8	0.0	0.0	-42.6757	-42.6757	21	3	0	1495	0	3	1

Interface residues

• E-M: ARG149E, GLY153E, GLY77M, GLY80M, GLY81M, LYS152E, LYS154E, PRO147E, PRO79M, SER76M, TYR151E, TYR75M, TYR78M, VAL150E
• E-N: ALA20E, ARG13E, ARG19E, ARG71N, ASP17E, ASP18E, ASP73N, GLY74N, LYS70N, PHE15E, PRO72N, SER75N, VAL21E
• E-0: ALA114E, ALA162E, ARG111E, ARG20, ASN192E, GLY110E, GLY112E, GLY161E, HIS30, LEU40, LYS109E, LYS118E, PHE113E, PRO191E, SER108E, TYR160E
• E-R: ALA20E, ALA28E, ALA5R, ARG13E, ARG13R, ARG16E, ARG19E, ARG3R, ARG53R, ARG76E, ASN180E, ASN192E, ASN2R, ASN55R, ASN58R, ASP174E, ASP17E, ASP18E, GLN54E, GLU11R, GLU178E, GLU179E, GLY10E, GLY193E, GLY29E, GLY4R, GLY56R, GLY6E, HIS79R, ILE14E, ILE176E, ILE26E, ILE75R, ILE7R, LEU181E, LEU182E, LEU183E, LEU27E, LEU52E, LEU6R, LEU78R, LEU82R, LEU9R, LYS33R, LYS35R, LYS8E, LYS8R, MET11E, MET1R, PHE15E, PHE51E, PHE57R, PHE76R, PRO177E, PRO77R, PRO81R, SER12R, SER80R, THR12E, THR24E, THR40R, THR59R, THR60R, TYR14R, TYR32R, VAL10R, VAL15R, VAL173E, VAL175E, VAL21E, VAL23E, VAL25E, VAL34R, VAL7E, VAL9E
• F-O: ALA113F, ALA12O, ARG117F, ARG119F, ARG15O, ARG188F, ARG21O, ARG38F, ARG45F, ARG7O, ARG95F, ASN13O, ASN29F, ASN9O, ASP116F, ASP185F, ASP5O, GLU120F, GLU190F, GLU35F, GLY11O, HIS31F, ILE186F, ILE28F, LEU32F, LEU33F, LEU3O, LEU41F, LEU6O, LYS14O, LYS2O, MET112F, MET1O, PHE90F, PRO10O, PRO30F, PRO8O, SER153F, SER42O, SER4O, THR189F, TRP34F, TYR184F, TYR97F, VAL183F, VAL187F, VAL36F, VAL37F
• F-1: ALA49F, ARG31, ARG45F, ARG95F, GLY91F, PRO21, PRO92F, THR51F, TYR97F, VAL88F
• F-7: ALA58F, LYS377
• G-4: ALA110G, ALA124, ALA61G, ALA6G, ARG113G, ARG115G, ARG118G, ARG181G, ARG484, ARG98G, ARG9G, ASN108G, ASN204, ASP116G, ASP147G, ASP4G, ASP97G, CYS164, CYS364, CYS394, GLN464, GLN58G, GLN66G, GLU104G, GLU143G, GLU14G, GLU174G, GLU234, GLU304, GLU34, GLU344, GLU59G, GLY119G, GLY174, GLY177G, GLY44, GLY454, GLY65G, HIS64, ILE101G, ILE114G, ILE140G, ILE144, ILE144G, ILE154, ILE224, ILE314, ILE54, ILE63G, LEU103G, LEU106G, LEU107G, LEU111G, LEU120G, LEU175G, LEU176G, LEU3G, LEU60G, LEU62G, LEU7G, LEU94, LEU94G, LYS105G, LYS10G, LYS182G, LYS24, LYS284, LYS384, LYS67G, LYS84, LYS8G, MET14, MET148G, MET99G, PHE102G, PHE117G, PHE141G, PHE178G, PHE180G, PHE424, PHE494, PRO112G, PRO114, PRO142G, PRO179G, PRO294, PRO414, PRO68G, PRO74, SER264, SER374, THR145G, THR244, THR274, THR444, THR64G, TRP100G, TYR146G, TYR254, TYR324, TYR434, VAL104, VAL109G, VAL214, VAL334, VAL354, VAL5G
• K-Z: ALA26K, ALA64Z, ARG27K, ARG50Z, ARG52Z, ARG76Z, ASN28K, ASN43K, GLN47Z, GLU72Z, GLU75Z, GLY24K, HIS66Z, ILE67Z, LEU31K, LEU38K, LYS69Z, MET1K, PRO23K, PRO32K, PRO68Z, SER42K, SER65Z, THR40K, TYR71Z, VAL37K, VAL49Z, VAL51Z, VAL62Z, VAL70Z, VAL74Z
• M-1: ALA671, ALA681, ALA961, ALA991, ARG1011, ARG12M, ARG35M, ARG39M, ARG591, ARG641, ARG701, ARG921, ASN45M, ASN661, ASN941, ASP41M, ASP561, ASP971, CYS691, GLN711, GLY36M, HIS38M, ILE621, ILE651, LEU601, LEU951, LEU981, LYS29M, LYS2M, LYS37M, MET1M, MET48M, PHE1061, PHE571, PRO1031, PRO40M, PRO44M, PRO6M, THR32M, THR3M, THR43M, TRP42M, TRP611, TYR4M, VAL1001, VAL46M, VAL5M, VAL631
• M-2: ARG132, ARG212, GLN112, ILE42, LEU182, LEU202, LYS102, LYS2M, MET1M, TYR122, VAL142, VAL52
• N-R: ALA118N, ALA11N, ALA76N, ALA83N, ARG103R, ARG104N, ARG107N, ARG39R, ARG41R, ARG51R, ARG64N, ARG64R, ARG71N, ARG74R, ARG78N, ASN104R, ASN38R, ASP44R, ASP73N, ASP80N, ASP81N, GLN43R, GLU105N, GLU108N, GLU120N, GLU36R, GLU46R, GLU68N, GLU73R, GLU9N, GLY100N, GLY37R, GLY69R, GLY71R, GLY74N, ILE50R, ILE69N, ILE75R, ILE77N, ILE83R, LEU122N, LEU82R, LYS33R, LYS35R, LYS65R, LYS66N, LYS70N, MET112N, PHE45R, PHE61R, PHE76R, PHE79N, PHE99N, PRO101N, PRO119N, PRO72N, PRO77R, PRO81R, SER106R, SER67R, SER75N, SER80R, THR60R, THR62R, THR65N, TYR100R, TYR32R, TYR68R, VAL102N, VAL115N, VAL121N, VAL34R, VAL63N, VAL63R, VAL66R, VAL70R, VAL72R, VAL98N
• O-1: ARG361, PHE401, PRO23O
• O-2: ARG822, ARG832, GLN802, GLY22O, GLY24O, GLY26O, GLY28O, LYS29O, LYS782, PRO23O, SER25O, THR30O, TYR812, VAL792
• O-8: ALA108, ALA248, ALA558, ARG138, ARG308, ARG468, ARG49O, ARG50O, ARG55O, ARG578, ARG61O, ARG65O, ASP47O, GLN68O, GLU548, GLU568, GLY288, GLY458, GLY66O, GLY98, HIS318, HIS78, ILE168, ILE418, ILE588, LEU328, LEU508, LEU59O, LEU608, LEU618, LEU62O, LYS118, LYS128, LYS158, LYS268, LYS298, LYS448, LYS478, LYS58, LYS598, LYS64O, LYS88, MET258, MET48, MET60O, MET67O, PHE488, PHE51O, PRO48O, PRO538, PRO63O, THR178, THR278, THR57O, THR58O, THR68, VAL148, VAL228, VAL238
• P-V: ALA107P, ALA136P, ALA140P, ALA173V, ALA20P, ALA28P, ALA36P, ALA51V, ARG101P, ARG122V, ARG133P, ARG134P, ARG49V, ARG59P, ARG60P, ARG72V, ARG79V, ARG80V, ARG81V, ARG82V, ASN75V, ASP123V, ASP135P, ASP138P, ASP25P, ASP31P, ASP45V, ASP77V, ASP87V, GLN118V, GLN141P, GLN50V, GLN73V, GLU119V, GLU139P, GLU38P, GLU84V, GLY100P, GLY108P, GLY114V, GLY115V, GLY19P, GLY23P, GLY24P, GLY26V, GLY30P, GLY33P, GLY61P, GLY62P, HIS54V, HIS85V, ILE120V, ILE131P, ILE53V, ILE64P, LEU117V, LEU24V, LEU37P, LEU41V, LEU76V, LYS130P, LYS18P, LYS22P, LYS46V, LYS63P, LYS78V, LYS98P, PHE29P, PHE44V, PHE48V, PHE58P, PHE65P, PHE88V, PRO176V, PRO25V, PRO39P, PRO83V, PRO99P, SER52V, THR110P, THR21P, TYR137P, TYR26P, TYR29V, TYR32P, TYR99V, VAL102P, VAL106P, VAL109P, VAL116V, VAL132P, VAL174V, VAL175V, VAL27P, VAL27V, VAL35P, VAL71V, VAL74V, VAL86V
• P-3: ARG10P, ARG113, ARG82P, ASN123, GLY63, GLY83, GLY84P, GLY86P, LEU73, LYS11P, LYS77P, LYS85P, LYS87P, MET83P, PRO78P, SER93, THR103
• 0-S: ALA1010, ALA1090, ARG1030, ARG1040, ARG1050, ARG37S, ARG42S, ASN40S, ASP1070, GLU1020, GLY1060, GLY1080, LEU1000, LYS41S, PHE46S, PRO1100, THR39S, TYR38S, TYR45S
• 0-5: ALA1010, ALA1120, ALA535, ARG330, ARG555, ARG960, CYS465, GLU1020, GLU1150, GLU1180, GLY505, GLY545, HIS435, LEU1000, LEU1110, LEU1130, LEU305, LEU980, LYS405, LYS565, LYS990, MET395, PRO415, PRO425, PRO475, THR350, THR445, TYR515, TYR525, VAL1170, VAL380, VAL455, VAL970
• Q-3: ARG20Q, ARG3Q, ARG723, ARG743, ASN16Q, ASN503, GLU43Q, GLY22Q, GLY483, GLY523, LEU4Q, LEU623, LEU753, LYS19Q, LYS493, MET533, PHE12Q, PRO473, THR21Q, TYR783, VAL513
• 1-2: ALA1071, ALA1131, ALA32, ALA411, ALA421, ALA461, ALA481, ALA772, ALA861, ALA961, ALA991, ARG1011, ARG1121, ARG132, ARG361, ARG501, ARG531, ARG822, ARG832, ARG921, ASN441, ASN941, ASP911, ASP971, GLN1041, GLN112, GLU1021, GLU1081, GLU371, GLU432, GLU891, GLY412, GLY422, GLY431, GLY482, GLY82, GLY862, GLY871, GLY92, HIS491, HIS872, ILE171, ILE42, ILE702, ILE881, LEU1091, LEU201, LEU382, LEU391, LEU392, LEU402, LEU712, LEU831, LEU951, LEU981, LYS102, LYS131, LYS161, LYS442, LYS511, LYS541, LYS62, LYS742, LYS762, LYS841, LYS851, LYS852, LYS931, PHE1061, PHE22, PHE401, PHE752, PRO502, SER732, THR452, THR492, THR72, TYR122, TYR451, TYR471, TYR812, VAL1001, VAL1051, VAL1101, VAL142, VAL462, VAL472, VAL512, VAL52, VAL522, VAL722, VAL901
• 1-5: ALA145, ARG155, GLY261, LEU271, LYS105, LYS135, LYS301, LYS341, LYS95, SER125, SER291, SER311, TRP251
• S-5: ALA245, ALA25, ALA32S, ALA385, ARG15S, ARG165, ARG18S, ARG195, ARG205, ARG33S, ARG37S, ARG88S, ARG90S, ARG92S, ASN34S, ASN40S, ASP22S, ASP94S, CYS465, GLU30S, GLU31S, GLU485, GLY43S, HIS235, ILE24S, ILE35S, LEU19S, LEU23S, LEU255, LEU305, LEU36S, LYS16S, LYS27S, LYS35, LYS375, LYS405, LYS41S, LYS565, MET395, PRO275, PRO285, PRO325, PRO415, PRO475, THR265, THR295, THR39S, THR445, TYR38S, VAL17S, VAL20S, VAL21S, VAL455
• T-W: ALA10T, ALA39W, ALA42T, ALA46T, ALA4T, ALA91T, ARG26W, ARG30W, ARG36W, ASP6T, GLN38W, GLU27W, GLU31W, GLU34W, GLU44T, GLY42W, GLY94T, ILE41W, ILE57W, ILE89T, ILE8T, LEU13T, LEU32W, LEU61W, LEU92T, LEU9T, LYS23W, LYS28W, LYS29W, LYS48T, MET33W, PHE28T, PHE37W, PHE47T, PRO11T, SER40W, THR3T, THR45T, TRP29T, TYR18T, TYR5T, VAL12T, VAL25W, VAL30T, VAL43T, VAL7T
• T-7: ARG477, ARG497, ARG60T, ARG97, LYS487, TRP407, TYR69T
• 3-8: ARG553, LYS398
• 6-8: ARG428, ARG66, ASN266, ASN338, GLN358, GLU126, GLU246, GLY388, ILE418, LEU106, LEU116, LEU328, LEU96, LYS256, LYS276, LYS368, LYS86, SER378, THR236, TRP348, TYR216