3I8H

elongation complex of the 70s ribosome with three trnas and mrna.this entry 3i8h contains 30s ribosomal subnit. the 50s ribosomal subunit can be found in pdb entry 3i8i. molecule a in the same asymmetric unit is deposited as 3i8f (50s) and 3i8g (30s).

• Total interactions analyzed: 325
• Total true interactions: 26
• Strongest Interaction:
  • Chains: M-Q
  • Int. Res.: 55
  • Norm. En. per Res.: -4.9914
• Hub Node: F(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
E-F	0.0	0.0	-0.0025	-0.0025	3	0	0	2	0	1	1
E-H	0.0	0.0	-0.017	-0.017	4	0	0	13	0	0	3
E-K	-2.5524	-36.8942	-65.7721	-105.2187	34	10	0	2928	2	16	18
F-G	0.0	3.569	-1.0195	2.5495	9	0	0	166	0	0	8
F-H	0.0	-24.9024	-11.6775	-36.5799	14	0	0	668	1	4	5
F-M	0.0	7.5475	-78.2993	-70.7518	59	2	2	3533	0	17	28
F-Q	-25.0616	11.8728	-214.356	-227.5449	75	20	4	9050	0	18	38
G-H	0.0	-35.6935	-42.61	-78.3035	44	2	0	2069	1	7	8
H-K	-13.1595	-18.3732	-144.087	-175.6197	63	15	2	6684	2	47	42
I-R	0.0	0.0	-1.6117	-1.6117	3	0	0	127	0	2	2
I-U	-63.1641	-46.2941	-273.213	-382.6713	84	43	9	10784	3	14	23
J-L	0.0	2.1515	-46.3235	-44.172	40	12	4	2588	0	6	8
J-N	0.0	0.0	-62.809	-62.809	25	1	4	2428	0	2	7
J-X	0.0	0.0	-0.0266	-0.0266	2	0	0	12	0	2	0
K-O	0.0	0.0	-9.5008	-9.5008	9	1	0	461	0	0	1
K-T	-8.1705	5.1199	-29.2365	-32.2871	15	0	0	1274	0	2	9
L-M	0.0	0.0	-23.4112	-23.4112	18	6	0	1431	0	9	17
L-P	0.0	3.4812	-1.3276	2.1536	3	0	0	142	0	0	3
L-Q	0.0	0.0	-18.7748	-18.7748	9	1	0	581	0	0	0
M-Q	-30.4622	-39.735	-204.329	-274.5262	55	18	7	8657	3	16	37
N-U	-21.2422	-14.5266	-80.9394	-116.7082	37	9	2	3649	2	14	17
O-T	0.0	0.0	-45.4703	-45.4703	23	3	4	2193	0	0	8
P-V	-25.3171	21.4395	-95.8161	-99.6938	55	18	0	4811	0	9	31
P-X	0.0	2.3134	-2.3742	-0.0608	12	0	0	405	0	3	10
Q-V	0.0	0.0	-0.1366	-0.1366	4	0	0	48	0	0	0
R-T	0.0	-1.063	-0.1968	-1.2597	10	0	0	86	0	7	6

Interface residues

• E-F: ARG179F, GLU134E, PRO131E
• E-H: ARG64H, LEU180E, LYS106E, TYR60H
• E-K: ALA177E, ARG175E, ARG178E, ARG18K, ARG30E, ARG53E, ARG68K, ARG69K, ARG75K, ASP193E, ASP195E, ASP198E, ASP73K, GLN70K, GLU176E, GLY71K, ILE182E, ILE200E, LEU180E, LEU196E, LYS179E, LYS27E, PHE181E, PRO183E, PRO194E, PRO72K, PRO74K, PRO76K, TYR199E, TYR20K, VAL174E, VAL184E, VAL197E, VAL19K
• F-G: ALA129F, ARG127F, ARG132F, ARG47G, ARG50G, GLY158F, LYS46G, PHE128F, VAL130F
• F-H: ARG131F, ARG132F, ARG164F, ARG25H, GLU166F, GLU50H, LEU53H, LYS135F, PHE26H, PHE28H, PRO49H, PRO52H, TRP167F, VAL51H
• F-M: ALA24F, ALA60F, ALA61F, ALA65F, ARG21F, ARG43M, ARG45M, ARG51M, ARG59F, ARG66M, ARG9M, ASN3F, ASN63F, ASN69M, ASP12M, ASP17F, ASP56F, ASP89M, GLU58F, GLU61M, GLU64M, GLU95M, GLY10M, GLY13F, GLY25F, GLY2F, GLY93M, GLY9F, HIS13M, HIS68M, HIS6F, ILE14F, ILE57F, ILE5F, ILE96M, LEU16M, LEU32F, LEU33F, LEU65M, LEU90M, LYS14M, LYS26F, LYS27F, LYS4F, PHE10F, PHE11M, PHE47M, PHE63M, PRO91M, SER20F, THR15F, THR15M, THR67M, THR92M, TRP18F, TRP22F, TYR23F, TYR29F, VAL94M
• F-Q: ALA24F, ALA48Q, ARG11F, ARG16F, ARG21F, ARG23Q, ARG26Q, ARG30F, ARG35Q, ARG38F, ARG40F, ARG45Q, ARG54F, ARG57Q, ARG59F, ASN3F, ASP17F, ASP36F, ASP56F, CYS24Q, CYS43Q, GLN28F, GLN37F, GLN52Q, GLU19F, GLU44F, GLU46Q, GLU58F, GLY13F, GLY25F, GLY2F, GLY38Q, GLY51Q, GLY55Q, GLY9F, HIS31F, HIS49Q, HIS6F, ILE14F, ILE57F, ILE5F, ILE8F, LEU12F, LEU178F, LEU32F, LEU33F, LEU34F, LEU39Q, LEU44Q, LEU47Q, LEU53Q, LYS11Q, LYS26F, LYS27F, LYS4F, LYS50Q, LYS58Q, PHE10F, PHE186F, PHE36Q, PHE37Q, PRO54Q, PRO7F, SER20F, THR22Q, TRP18F, TRP22F, TYR184F, TYR23F, TYR29F, TYR34Q, VAL25Q, VAL33Q, VAL55F, VAL56Q
• G-H: ALA102H, ALA104H, ALA108H, ALA95H, ARG107H, ARG209G, ARG37H, ARG50G, ARG57G, ASP117H, ASP53G, GLN201G, GLU111H, GLU205G, GLY103H, GLY87G, GLY90G, GLY97H, GLY99H, ILE101H, ILE11H, ILE13H, ILE204G, LEU202G, LYS86G, LYS9H, MET10H, PHE206G, PRO96H, SER208G, SER83G, SER91G, THR116H, THR89G, THR98H, TYR54G, VAL100H, VAL105H, VAL115H, VAL51H, VAL55H, VAL56G, VAL88G, VAL92G
• H-K: ALA146H, ALA40K, ALA94H, ALA95H, ARG102K, ARG104K, ARG105K, ARG122K, ARG140H, ARG143H, ARG150H, ARG152H, ARG41K, ARG69K, ASP147H, GLN141H, GLN72H, GLN78K, GLU137H, GLU149H, GLU155H, GLU42K, GLU77K, GLU79H, GLU81H, GLY106K, GLY108K, GLY154H, GLY43K, GLY66K, HIS78H, HIS81K, HIS82K, ILE109K, ILE38K, ILE45K, ILE76H, ILE80H, ILE80K, LEU107K, LEU142H, LEU151H, LEU39K, LYS145H, LYS153H, LYS46K, LYS64K, LYS92H, PHE44K, PRO67K, PRO76K, PRO77H, PRO93H, THR120K, THR144H, THR75H, TRP138K, TYR65K, VAL103K, VAL137K, VAL148H, VAL79K, VAL82H
• I-R: ARG2I, GLU69I, PRO2R
• I-U: ALA101I, ALA24U, ALA49I, ALA73U, ALA99I, ARG32U, ARG35U, ARG46I, ARG47I, ARG72U, ARG74U, ARG80I, ARG87I, ASN100I, ASN36U, ASN7I, ASP30U, ASP33U, GLN57I, GLN63U, GLN64I, GLN94I, GLU28U, GLU38U, GLU41I, GLU42I, GLU5I, GLU62U, GLU83U, GLU95I, GLY27U, GLY58I, GLY77U, ILE52I, ILE65U, ILE75U, ILE8I, LEU26U, LEU31U, LEU40U, LEU43I, LEU44U, LEU48I, LEU58U, LEU61I, LEU66U, LEU76U, LEU78U, LEU79U, LEU98I, LYS23U, LYS39I, LYS41U, LYS61U, LYS68U, LYS71U, LYS92I, MET89I, PHE29U, PHE43U, PHE60I, PHE81U, PHE97I, PRO51I, PRO56I, PRO80U, PRO96I, SER59U, SER93I, THR25U, THR69U, THR82U, TRP62I, TYR34U, TYR4I, TYR50I, TYR63I, VAL37U, VAL40I, VAL6I, VAL88I, VAL90I, VAL91I, VAL9I
• J-L: ALA39J, ALA40J, ALA43L, ALA45L, ALA46L, ARG107L, ARG10J, ARG10L, ARG41J, ARG42L, ARG51L, ASN37J, ASP105L, ASP15J, ASP45J, ASP75L, GLN13J, GLN38L, GLU48L, GLY39L, ILE27J, ILE42J, ILE74L, LEU16J, LEU38J, LEU40L, LEU47L, LEU99L, LYS36J, LYS70L, LYS78L, PHE101L, PHE37L, PHE43J, PRO14J, SER71L, TYR44J, VAL17J, VAL41L, VAL44L
• J-N: ALA147J, ALA150J, ALA152J, ALA60N, ALA61N, ALA89N, ARG149J, ARG54N, ASN148J, GLN62N, GLN93N, GLU146J, GLY56N, HIS153J, LEU63N, LEU66N, LYS55N, PRO58N, SER53N, THR57N, TYR151J, TYR154J, TYR50N, TYR59N, TYR85J
• J-X: ARG10X, LYS35J
• K-O: ARG91K, ARG92K, ASN8O, GLY90K, ILE7O, LEU10O, LYS88K, THR6O, VAL11O
• K-T: ARG91K, ARG92K, GLY33T, GLY90K, HIS29T, LEU31T, LYS34T, LYS88K, PRO28T, PRO30T, PRO89K, TYR32T, TYR94K, VAL35T, VAL93K
• L-M: ARG111L, ARG46M, ARG51M, ARG60M, ASP58M, GLU61M, GLY115L, HIS62M, ILE50M, LYS112L, LYS113L, LYS116L, LYS57M, PRO123L, SER59M, THR48M, TYR114L, VAL49M
• L-P: ALA123P, ARG128L, LYS122P
• L-Q: ALA59Q, ARG111L, GLU110L, LYS112L, LYS113L, LYS58Q, SER60Q, TRP61Q, TYR114L
• M-Q: ALA48Q, ALA59Q, ARG29Q, ARG35Q, ARG41Q, ARG45M, ARG45Q, ARG46M, ARG51M, ARG57Q, ARG60M, ARG66M, ASP12M, CYS40Q, CYS43Q, GLU46Q, GLU61M, GLU64M, GLY10M, GLY52M, GLY55Q, GLY93M, HIS13M, HIS49Q, HIS56M, HIS62M, HIS68M, ILE42Q, ILE50M, LEU44Q, LEU47Q, LEU53Q, LEU65M, LYS14M, LYS55M, LYS57M, LYS58Q, PHE11M, PHE36Q, PHE37Q, PHE47M, PHE54M, PHE63M, PRO53M, PRO54Q, SER32Q, SER59M, SER60Q, THR48M, THR67M, TRP61Q, TYR34Q, VAL44M, VAL49M, VAL56Q
• N-U: ARG18N, ARG74U, ARG85N, ARG87U, ARG91N, ARG96N, ASP110N, ASP111N, ASP81N, GLN99N, GLU83U, GLU92N, HIS116N, ILE108N, ILE83N, ILE95N, LEU85U, LYS106N, LYS49U, LYS84U, LYS88U, PHE81U, PRO113N, PRO115N, PRO80U, SER107N, THR112N, THR47U, THR82U, THR87N, TYR20N, VAL105N, VAL109N, VAL114N, VAL82N, VAL84N, VAL86U
• O-T: ARG12O, ARG15O, ARG38T, ASN8O, GLN9O, GLU16O, GLY14O, GLY33T, HIS29T, ILE36T, ILE7O, LEU10O, LEU31T, LYS13O, LYS17O, LYS34T, LYS37T, PHE27T, PRO30T, THR6O, TYR32T, VAL11O, VAL35T
• P-V: ALA118P, ALA75V, ALA89V, ARG104P, ARG36V, ARG3V, ARG78V, ARG80P, ARG81V, ARG88P, ARG91P, ARG93P, ARG94P, ARG99P, ASN65V, ASP83P, CYS86P, GLN101P, GLU64V, GLU73V, GLY100P, GLY119P, GLY68V, GLY72V, GLY82V, GLY84V, GLY85P, GLY89P, HIS69V, HIS83V, HIS92P, ILE40V, ILE62V, ILE84P, LEU81P, LEU90P, LEU96P, LYS111P, LYS120P, LYS70V, LYS88V, MET66V, MET82P, PHE74V, PRO2V, PRO76V, THR63V, THR77V, TYR61V, TYR80V, TYR87P, VAL117P, VAL60V, VAL67V, VAL98P
• P-X: ALA28P, ARG29P, ARG7X, ASP5X, GLU32P, GLY26P, LYS20X, LYS27P, LYS31P, THR20P, THR8X, TYR21X
• Q-V: ARG19Q, ARG37V, PHE16Q, VAL18Q
• R-T: ARG68R, ARG72R, ARG81T, ARG88R, ASP83T, GLN71R, GLU86T, ILE90T, LYS87T, MET82T