3I8G

elongation complex of the 70s ribosome with three trnas and mrna. this entry 3i8g contains 30s ribosomal subnit.the 50s ribosomal subunit can be found in pdb entry 3i8f. molecule b in the same asymmetric unit is deposited as 3i8g (30s) and 3i8f (50s).

• Total interactions analyzed: 325
• Total true interactions: 25
• Strongest Interaction:
  • Chains: M-Q
  • Int. Res.: 53
  • Norm. En. per Res.: -6.0946
• Hub Node: F(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
E-F	0.0	0.0	-0.0039	-0.0039	3	0	0	5	0	0	1
E-H	0.0	0.0	-0.0425	-0.0425	5	0	0	26	0	1	2
E-K	-11.0496	-37.7195	-70.6162	-119.3853	33	5	0	2896	2	17	17
F-G	0.0	1.0941	-0.5501	0.544	9	0	0	107	0	0	8
F-H	0.0	-18.6511	-8.8654	-27.5165	14	2	0	651	0	5	5
F-M	-7.3562	-0.1917	-72.3196	-79.8675	56	4	2	3597	0	14	27
F-Q	-2.3626	14.5032	-219.248	-207.1074	77	16	3	8972	0	16	38
G-H	0.0	-7.5508	-50.8856	-58.4364	51	8	0	2817	0	9	11
H-K	-32.6629	-65.4128	-156.073	-254.1487	65	23	2	7288	4	46	43
I-R	0.0	0.0	-0.1332	-0.1332	4	0	0	38	0	3	2
I-U	-22.4023	-50.331	-275.117	-347.8503	86	22	9	10275	4	14	21
J-L	-7.7662	2.505	-34.1993	-39.4604	38	4	4	2165	0	6	8
J-N	-5.932	0.0	-57.308	-63.24	26	2	4	2399	0	3	6
J-X	0.0	0.0	-0.0072	-0.0072	2	0	0	8	0	2	0
K-O	0.0	0.0	-11.0676	-11.0676	9	1	0	503	0	0	1
K-T	-3.2551	4.4689	-29.605	-28.3911	16	0	0	1295	0	2	8
L-M	0.0	-1.8775	-30.9047	-32.7822	18	10	0	1476	0	12	17
L-Q	0.0	0.0	-15.6427	-15.6427	9	1	0	580	0	0	1
M-Q	-56.9335	-38.6846	-227.395	-323.0131	53	24	6	8686	4	15	37
N-U	-19.0094	-18.4933	-77.6121	-115.1148	33	9	2	3198	1	14	17
O-T	0.0	0.0	-49.4719	-49.4719	23	5	4	2378	0	0	8
P-V	-6.4567	10.5491	-79.3642	-75.2718	49	13	1	3871	0	10	25
P-X	0.0	0.0	-2.3705	-2.3705	13	0	0	350	0	4	9
Q-V	0.0	0.0	-0.1536	-0.1536	3	0	0	42	0	0	0
R-T	0.0	-1.2484	-0.4426	-1.691	13	0	0	122	0	9	6

Interface residues

• E-F: ARG130E, ARG179F, VAL207F
• E-H: ARG64H, LEU180E, LYS179E, PHE181E, THR103E
• E-K: ALA177E, ARG175E, ARG178E, ARG30E, ARG53E, ARG68K, ARG69K, ARG75K, ASP193E, ASP195E, ASP198E, ASP73K, GLN70K, GLU176E, GLY71K, ILE182E, ILE200E, LEU180E, LEU196E, LYS179E, LYS27E, PHE181E, PRO183E, PRO194E, PRO72K, PRO74K, PRO76K, TYR199E, TYR20K, VAL174E, VAL184E, VAL197E, VAL19K
• F-G: ALA129F, ARG127F, ARG132F, ARG47G, ARG49G, GLY158F, LYS46G, PHE128F, VAL130F
• F-H: ARG131F, ARG132F, ARG15H, ARG164F, ARG25H, GLU166F, GLU50H, LEU53H, LYS135F, PHE26H, PHE28H, PRO49H, PRO52H, VAL51H
• F-M: ALA24F, ALA60F, ALA61F, ALA65F, ARG21F, ARG43M, ARG45M, ARG51M, ARG59F, ARG66M, ARG9M, ASN3F, ASN63F, ASP12M, ASP17F, ASP89M, GLN28F, GLU58F, GLU61M, GLU64M, GLU95M, GLU97M, GLY10M, GLY13F, GLY25F, GLY93M, GLY9F, HIS13M, HIS68M, HIS6F, ILE14F, ILE5F, ILE96M, LEU12F, LEU16M, LEU33F, LEU65M, LEU90M, LYS14M, LYS26F, LYS27F, LYS4F, PHE10F, PHE11M, PHE47M, PHE63M, PRO91M, SER20F, THR15M, THR67M, THR92M, TRP18F, TRP22F, TYR23F, TYR29F, VAL94M
• F-Q: ALA187F, ALA24F, ALA48Q, ARG11F, ARG16F, ARG21F, ARG23Q, ARG26Q, ARG30F, ARG35Q, ARG38F, ARG40F, ARG45Q, ARG54F, ARG57Q, ARG59F, ASN3F, ASP17F, ASP36F, ASP56F, CYS24Q, CYS43Q, GLN28F, GLN37F, GLN52Q, GLU19F, GLU44F, GLU46Q, GLU58F, GLY13F, GLY185F, GLY25F, GLY38Q, GLY51Q, GLY55Q, GLY9F, HIS31F, HIS49Q, HIS6F, ILE14F, ILE57F, ILE5F, ILE8F, LEU12F, LEU178F, LEU33F, LEU34F, LEU39Q, LEU44Q, LEU47Q, LEU53Q, LYS11Q, LYS26F, LYS27F, LYS4F, LYS50Q, LYS58Q, PHE10F, PHE186F, PHE36Q, PHE37Q, PRO114F, PRO54Q, PRO7F, SER20F, SER60Q, THR22Q, TRP18F, TRP22F, TYR184F, TYR23F, TYR29F, TYR34Q, VAL25Q, VAL33Q, VAL55F, VAL56Q
• G-H: ALA102H, ALA104H, ALA108H, ALA30H, ALA95H, ARG107H, ARG209G, ARG37H, ARG50G, ARG57G, ASN199G, ASP117H, ASP53G, GLN201G, GLU111H, GLU205G, GLY103H, GLY87G, GLY90G, GLY97H, GLY99H, ILE101H, ILE118H, ILE11H, ILE13H, ILE204G, LEU119H, LEU12H, LEU202G, LYS9H, MET10H, PHE206G, PHE79G, PRO52H, PRO96H, SER208G, SER83G, SER91G, THR116H, THR89G, THR98H, TYR207G, TYR54G, VAL100H, VAL105H, VAL32H, VAL51H, VAL55H, VAL56G, VAL88G, VAL92G
• H-K: ALA146H, ALA40K, ALA94H, ALA95H, ARG102K, ARG104K, ARG105K, ARG122K, ARG140H, ARG143H, ARG150H, ARG152H, ARG41K, ARG69K, ASP147H, GLN141H, GLN72H, GLN78K, GLU137H, GLU149H, GLU155H, GLU42K, GLU77K, GLU79H, GLU81H, GLY106K, GLY108K, GLY154H, GLY43K, GLY66K, HIS78H, HIS81K, HIS82K, ILE109K, ILE118H, ILE45K, ILE76H, ILE80H, ILE80K, LEU107K, LEU119H, LEU142H, LEU151H, LEU39K, LEU91H, LYS145H, LYS153H, LYS46K, LYS64K, LYS92H, PHE44K, PRO67K, PRO76K, PRO77H, PRO93H, PRO96H, THR144H, THR75H, TRP138K, TYR65K, VAL103K, VAL137K, VAL148H, VAL79K, VAL82H
• I-R: ARG2I, GLU69I, ILE3R, PRO2R
• I-U: ALA101I, ALA24U, ALA49I, ALA73U, ALA99I, ARG32U, ARG35U, ARG46I, ARG47I, ARG72U, ARG74U, ARG80I, ARG87I, ASN100I, ASN36U, ASN7I, ASP30U, ASP33U, GLN57I, GLN63U, GLN64I, GLN94I, GLU28U, GLU38U, GLU41I, GLU42I, GLU5I, GLU62U, GLU83U, GLU95I, GLY27U, GLY57U, GLY58I, GLY77U, ILE52I, ILE65U, ILE70U, ILE75U, ILE8I, LEU26U, LEU31U, LEU43I, LEU44U, LEU48I, LEU58U, LEU61I, LEU66U, LEU76U, LEU78U, LEU79U, LEU98I, LYS23U, LYS39I, LYS41U, LYS61U, LYS68U, LYS71U, LYS92I, MET89I, PHE29U, PHE43U, PHE60I, PHE81U, PHE97I, PRO51I, PRO56I, PRO80U, PRO96I, SER59U, SER93I, THR25U, THR69U, THR82U, TRP62I, TYR34U, TYR4I, TYR50I, TYR63I, VAL22U, VAL37U, VAL40I, VAL6I, VAL88I, VAL90I, VAL91I, VAL9I
• J-L: ALA39J, ALA40J, ALA43L, ALA45L, ALA46L, ARG107L, ARG10J, ARG41J, ARG42L, ARG51L, ASN37J, ASP15J, ASP45J, ASP75L, GLN11J, GLN13J, GLN38L, GLU48L, GLY100L, GLY39L, ILE27J, ILE42J, ILE74L, LEU16J, LEU38J, LEU40L, LEU99L, LYS36J, LYS70L, LYS78L, PHE101L, PHE43J, PRO14J, SER71L, TYR44J, VAL17J, VAL41L, VAL44L
• J-N: ALA147J, ALA150J, ALA152J, ALA60N, ALA89N, ARG149J, ARG155J, ARG54N, ARG96N, ASN148J, GLN62N, GLN86J, GLN93N, GLU146J, HIS153J, LEU63N, LEU66N, LYS55N, PRO58N, SER53N, THR57N, TYR151J, TYR154J, TYR50N, TYR59N, TYR85J
• J-X: ARG10X, LYS35J
• K-O: ARG91K, ARG92K, ASN8O, GLY90K, ILE7O, LEU10O, LYS88K, THR6O, VAL11O
• K-T: ARG91K, ARG92K, GLY33T, GLY90K, HIS29T, ILE36T, LEU31T, LYS34T, LYS88K, PRO28T, PRO30T, PRO89K, TYR32T, TYR94K, VAL35T, VAL93K
• L-M: ARG111L, ARG46M, ARG51M, ARG60M, ASP58M, GLU61M, GLY115L, HIS62M, ILE50M, LYS112L, LYS113L, LYS116L, LYS57M, PRO123L, SER59M, THR48M, TYR114L, VAL49M
• L-Q: ALA59Q, ARG111L, GLU110L, LYS112L, LYS113L, LYS58Q, SER60Q, TRP61Q, TYR114L
• M-Q: ALA48Q, ALA59Q, ARG29Q, ARG35Q, ARG41Q, ARG45M, ARG45Q, ARG46M, ARG51M, ARG57Q, ARG60M, ARG66M, ASP12M, CYS40Q, CYS43Q, GLU46Q, GLU61M, GLU64M, GLY10M, GLY52M, GLY55Q, GLY93M, HIS13M, HIS49Q, HIS56M, HIS62M, HIS68M, ILE42Q, ILE50M, LEU44Q, LEU53Q, LEU65M, LYS55M, LYS57M, LYS58Q, PHE11M, PHE36Q, PHE37Q, PHE47M, PHE54M, PHE63M, PRO53M, PRO54Q, SER32Q, SER59M, SER60Q, THR48M, THR67M, TRP61Q, TYR34Q, VAL44M, VAL49M, VAL56Q
• N-U: ARG74U, ARG85N, ARG87U, ARG91N, ASP110N, ASP111N, GLN104N, GLN99N, GLU83U, GLU92N, GLY48U, HIS116N, ILE108N, ILE83N, ILE95N, LEU85U, LYS106N, LYS49U, LYS84U, LYS88U, PHE81U, PRO113N, PRO80U, SER107N, THR112N, THR47U, THR82U, VAL105N, VAL109N, VAL114N, VAL82N, VAL84N, VAL86U
• O-T: ARG12O, ARG15O, ARG38T, ASN8O, GLN9O, GLU16O, GLY14O, GLY33T, HIS29T, ILE36T, ILE7O, LEU10O, LEU31T, LYS13O, LYS34T, LYS37T, PHE27T, PRO30T, PRO5O, THR6O, TYR32T, VAL11O, VAL35T
• P-V: ALA75V, ARG104P, ARG36V, ARG78V, ARG80P, ARG81V, ARG88P, ARG91P, ARG93P, ARG94P, ASN65V, ASN77P, ASP83P, CYS86P, GLU64V, GLU73V, GLY68V, GLY72V, GLY82V, GLY84V, GLY85P, GLY89P, HIS69V, HIS83V, ILE62V, ILE84P, LEU71V, LEU81P, LEU90P, LEU96P, LYS111P, LYS70V, LYS85V, MET66V, MET82P, PHE74V, PRO59V, PRO76V, THR103P, THR63V, THR77V, THR79V, TYR61V, TYR80V, TYR87P, VAL117P, VAL58V, VAL60V, VAL67V
• P-X: ALA28P, ARG29P, ARG6X, ARG7X, ARG99P, GLU32P, GLY26P, ILE25P, LYS20X, LYS27P, LYS31P, THR20P, TYR21X
• Q-V: ARG19Q, ARG37V, PHE16Q
• R-T: ARG64R, ARG68R, ARG72R, ARG79R, ARG81T, ARG88R, ASP83T, GLN71R, GLU86T, ILE90T, LYS87T, MET82T, PRO75R