3I6L

newly identified epitope n1 derived from sars-cov n protein complexed with hla-a*2402

• Total interactions analyzed: 3
• Total true interactions: 2
• Strongest Interaction:
  • Chains: D-E
  • Int. Res.: 128
  • Norm. En. per Res.: -4.4645
• Hub Node: D(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
D-E	-64.4568	-132.2473	-374.753	-571.4571	128	19	2	13296	6	46	40
D-F	-30.931	13.2182	-275.944	-293.6567	89	12	7	11208	0	12	13

Interface residues

• D-E: ALA117D, ALA125D, ALA236D, ALA246D, ALA24D, ARG12E, ARG14D, ARG17D, ARG202D, ARG21D, ARG234D, ARG35D, ARG3E, ARG48D, ARG6D, ARG97E, ASN24E, ASP119D, ASP122D, ASP238D, ASP30D, ASP34E, ASP37D, ASP53E, ASP59E, ASP96E, ASP98E, CYS25E, GLN115D, GLN242D, GLN2E, GLN32D, GLN87D, GLN8E, GLN96D, GLU229D, GLU232D, GLU36E, GLU46D, GLU50E, GLY120D, GLY207D, GLY237D, GLY239D, GLY26D, GLY29E, GLY91D, HIS114D, HIS13E, HIS188D, HIS191D, HIS192D, HIS31E, HIS51E, HIS93D, ILE124D, ILE1E, ILE23D, ILE35E, ILE7E, LEU206D, LEU230D, LEU54E, LEU64E, LEU65E, LEU95D, LYS121D, LYS186D, LYS243D, LYS58E, LYS6E, MET0E, MET97D, MET98D, MET99E, PHE22D, PHE22E, PHE241D, PHE30E, PHE36D, PHE56E, PHE62E, PHE8D, PHE99D, PRO14E, PRO235D, PRO32E, PRO47D, SER11D, SER11E, SER13D, SER28E, SER33E, SER4D, SER52E, SER55E, SER57E, SER61E, SER92D, SER9D, THR10D, THR190D, THR200D, THR233D, THR240D, THR94D, TRP204D, TRP244D, TRP60E, TRP95E, TYR10E, TYR113D, TYR116D, TYR118D, TYR123D, TYR26E, TYR27D, TYR63E, TYR66E, TYR67E, TYR7D, VAL12D, VAL231D, VAL25D, VAL27E, VAL34D, VAL85E, VAL9E
• D-F: ALA117D, ALA139D, ALA140D, ALA150D, ALA153D, ALA158D, ALA24D, ALA69D, ALA81D, ARG157D, ARG170D, ARG6D, ARG75D, ARG79D, ASN5F, ASN77D, ASP166D, ASP4F, ASP74D, CYS164D, GLN115D, GLN155D, GLN156D, GLN1F, GLN72D, GLN96D, GLU154D, GLU55D, GLU62D, GLU63D, GLU76D, GLY100D, GLY162D, GLY167D, GLY26D, GLY65D, HIS114D, HIS70D, ILE124D, ILE142D, ILE52D, ILE7F, ILE80D, LEU160D, LEU168D, LEU78D, LEU82D, LEU8F, LEU95D, LEU9F, LYS144D, LYS146D, LYS3F, LYS66D, LYS68D, MET45D, MET5D, MET97D, MET98D, PHE22D, PHE2F, PHE33D, PHE36D, PHE8D, PHE99D, SER71D, SER9D, THR143D, THR163D, THR64D, THR73D, TRP133D, TRP147D, TYR113D, TYR116D, TYR118D, TYR123D, TYR159D, TYR171D, TYR59D, TYR7D, TYR84D, TYR85D, VAL152D, VAL165D, VAL25D, VAL34D, VAL67D, VAL6F