3I6G

newly identified epitope mn2 from sars-cov m protein complexed withhla-a*0201

• Total interactions analyzed: 15
• Total true interactions: 8
• Strongest Interaction:
  • Chains: D-E
  • Int. Res.: 129
  • Norm. En. per Res.: -3.8765
• Hub Node: A(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-29.9813	-61.4863	-358.01	-449.4776	126	7	2	12806	1	46	40
A-C	-39.2187	0.0	-295.622	-334.8407	90	14	7	10155	0	0	0
A-D	-16.0085	-41.3515	-81.07	-138.43	67	1	3	3823	6	46	43
A-F	0.0	0.0	-26.8026	-26.8026	15	0	0	845	0	0	0
C-D	0.0	0.0	-25.7699	-25.7699	13	2	0	767	0	0	0
C-F	0.0	0.0	-0.0771	-0.0771	7	0	0	47	0	0	0
D-E	-58.5436	-76.344	-365.187	-500.0746	129	12	2	12993	2	45	42
D-F	-33.2167	0.0	-305.145	-338.3617	90	8	6	10271	0	0	0

Interface residues

• A-B: ALA117A, ALA125A, ALA236A, ALA246A, ALA24A, ALA40A, ARG111A, ARG12B, ARG14A, ARG17A, ARG202A, ARG21A, ARG234A, ARG35A, ARG3B, ARG48A, ARG6A, ARG97A, ASN21B, ASN24B, ASP119A, ASP122A, ASP238A, ASP30A, ASP34B, ASP37A, ASP39A, ASP53B, ASP59B, ASP96B, ASP98B, CYS25B, GLN115A, GLN242A, GLN2B, GLN32A, GLN87A, GLN8B, GLN96A, GLU229A, GLU232A, GLU46A, GLY120A, GLY237A, GLY239A, GLY26A, GLY29B, GLY91A, HIS114A, HIS13B, HIS188A, HIS191A, HIS192A, HIS31B, HIS51B, HIS93A, ILE124A, ILE1B, ILE23A, ILE35B, ILE7B, LEU206A, LEU230A, LEU54B, LEU64B, LEU65B, LYS121A, LYS186A, LYS243A, LYS58B, LYS6B, MET0B, MET189A, MET98A, MET99B, PHE22A, PHE22B, PHE241A, PHE30B, PHE36A, PHE56B, PHE62B, PHE8A, PHE9A, PRO14B, PRO235A, PRO32B, SER11A, SER11B, SER207A, SER28B, SER33B, SER52B, SER55B, SER57B, SER61B, SER92A, THR10A, THR190A, THR200A, THR233A, THR240A, THR94A, TRP204A, TRP244A, TRP60B, TRP95B, TYR10B, TYR113A, TYR116A, TYR118A, TYR123A, TYR26B, TYR27A, TYR63B, TYR66B, TYR67B, TYR7A, TYR99A, VAL12A, VAL231A, VAL25A, VAL27B, VAL34A, VAL95A, VAL9B
• A-C: ALA117A, ALA139A, ALA140A, ALA150A, ALA153A, ALA24A, ALA69A, ARG157A, ARG170A, ARG65A, ARG6A, ARG75A, ARG82A, ARG97A, ASP61A, ASP77A, CYS164A, GLN115A, GLN155A, GLN72A, GLU154A, GLU166A, GLU58A, GLU63A, GLY0C, GLY100A, GLY26A, GLY62A, GLY79A, HIS114A, HIS151A, HIS70A, HIS74A, ILE124A, ILE52A, LEU126A, LEU156A, LEU160A, LEU168A, LEU1C, LEU4C, LEU78A, LEU81A, LYS144A, LYS146A, LYS66A, LYS68A, MET2C, MET45A, MET5A, MET98A, PHE22A, PHE33A, PHE36A, PHE7C, PHE8A, PHE9A, SER5C, SER71A, THR142A, THR143A, THR163A, THR64A, THR73A, THR80A, TRP133A, TRP147A, TRP167A, TRP3C, TRP51A, TYR113A, TYR116A, TYR118A, TYR123A, TYR159A, TYR171A, TYR59A, TYR6C, TYR7A, TYR84A, TYR85A, TYR99A, VAL152A, VAL25A, VAL28A, VAL34A, VAL67A, VAL76A, VAL8C, VAL95A
• A-D: ALA149A, ALA149D, ALA150A, ALA150D, ALA153A, ALA153D, ALA158A, ALA158D, ARG108A, ARG108D, ARG131A, ARG131D, ARG157A, ARG157D, ARG169A, ARG169D, ARG170A, ARG170D, ARG65A, ARG65D, ASP129D, ASP61A, ASP61D, CYS164A, CYS164D, GLN155A, GLN155D, GLU148A, GLU148D, GLU154A, GLU154D, GLU161A, GLU161D, GLU166A, GLU166D, GLU58A, GLU58D, GLU63A, GLU63D, GLY162A, GLY162D, GLY62A, GLY62D, HIS151A, HIS151D, LEU130A, LEU130D, LEU156A, LEU156D, LEU160A, LEU160D, LYS146A, LYS146D, LYS66A, LYS66D, PRO57A, PRO57D, THR163A, THR163D, TRP167A, TRP167D, TRP60A, TRP60D, TYR159A, TYR159D, TYR59A, TYR59D
• A-F: ALA149A, ALA150A, ALA158A, GLN155A, GLU148A, GLU154A, GLY0F, HIS151A, LEU1F, LEU4F, MET2F, SER5F, TRP3F, TYR6F, VAL152A
• C-D: ALA149D, ALA150D, GLN155D, GLU148D, GLU154D, GLY0C, HIS151D, LEU1C, LEU4C, MET2C, TRP3C, TYR6C, VAL152D
• C-F: LEU4C, LEU4F, SER5F, TRP3C, TRP3F, TYR6C, TYR6F
• D-E: ALA117D, ALA125D, ALA15E, ALA236D, ALA246D, ALA24D, ALA40D, ARG111D, ARG12E, ARG14D, ARG202D, ARG21D, ARG234D, ARG35D, ARG3E, ARG48D, ARG6D, ARG97D, ARG97E, ASN24E, ASP119D, ASP122D, ASP238D, ASP30D, ASP34E, ASP37D, ASP39D, ASP53E, ASP59E, ASP96E, ASP98E, CYS25E, GLN115D, GLN242D, GLN2E, GLN32D, GLN87D, GLN8E, GLN96D, GLU229D, GLU232D, GLU46D, GLU50E, GLY120D, GLY237D, GLY239D, GLY26D, GLY29E, GLY91D, HIS114D, HIS13E, HIS188D, HIS191D, HIS192D, HIS31E, HIS51E, HIS74D, HIS93D, ILE124D, ILE1E, ILE23D, ILE35E, ILE7E, LEU201D, LEU206D, LEU230D, LEU54E, LEU64E, LEU65E, LYS121D, LYS186D, LYS243D, LYS58E, LYS6E, MET0E, MET189D, MET98D, MET99E, PHE22D, PHE22E, PHE241D, PHE30E, PHE36D, PHE56E, PHE62E, PHE8D, PHE9D, PRO14E, PRO235D, PRO32E, SER11D, SER11E, SER207D, SER28E, SER33E, SER52E, SER55E, SER57E, SER61E, SER92D, THR10D, THR190D, THR200D, THR233D, THR240D, THR94D, TRP204D, TRP244D, TRP60E, TRP95E, TYR10E, TYR113D, TYR116D, TYR118D, TYR123D, TYR26E, TYR27D, TYR63E, TYR66E, TYR67E, TYR7D, TYR99D, VAL12D, VAL231D, VAL25D, VAL27E, VAL34D, VAL95D, VAL9E
• D-F: ALA117D, ALA139D, ALA140D, ALA150D, ALA153D, ALA158D, ALA24D, ALA69D, ARG157D, ARG170D, ARG65D, ARG6D, ARG75D, ARG82D, ARG97D, ASP61D, ASP77D, CYS164D, GLN155D, GLN72D, GLU154D, GLU166D, GLU58D, GLU63D, GLY0F, GLY100D, GLY26D, GLY62D, GLY79D, HIS114D, HIS151D, HIS70D, HIS74D, ILE124D, ILE52D, LEU126D, LEU156D, LEU160D, LEU168D, LEU1F, LEU4F, LEU78D, LEU81D, LYS144D, LYS146D, LYS66D, LYS68D, MET2F, MET45D, MET5D, MET98D, PHE22D, PHE33D, PHE36D, PHE7F, PHE8D, PHE9D, SER5F, SER71D, THR142D, THR143D, THR163D, THR64D, THR73D, THR80D, TRP133D, TRP147D, TRP167D, TRP3F, TRP51D, TYR113D, TYR116D, TYR118D, TYR123D, TYR159D, TYR171D, TYR59D, TYR6F, TYR7D, TYR84D, TYR85D, TYR99D, VAL152D, VAL25D, VAL28D, VAL34D, VAL67D, VAL76D, VAL8F, VAL95D