3I1Z

crystal structure of the e. coli 70s ribosome in an intermediate state of ratcheting

• Total interactions analyzed: 276
• Total true interactions: 22
• Strongest Interaction:
  • Chains: J-N
  • Int. Res.: 53
  • Norm. En. per Res.: -4.8805
• Hub Node: C(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
B-E	0.0	0.0	-0.0197	-0.0197	6	0	0	17	0	2	4
C-D	0.0	0.0	-0.2195	-0.2195	7	0	0	57	0	0	3
C-E	0.0	0.0	-5.3985	-5.3985	12	0	0	275	0	7	6
C-J	0.0	-0.729	-65.7956	-66.5246	59	2	3	2790	0	11	9
C-N	-10.4694	-52.602	-243.951	-307.0223	76	13	5	9520	3	33	35
D-E	0.0	0.0	-0.011	-0.011	4	0	0	8	0	3	1
E-H	-8.8208	-18.5327	-155.504	-182.8575	65	33	2	7342	1	16	18
F-R	-23.7083	10.5093	-142.911	-156.11	62	23	3	7468	1	14	25
G-I	0.0	-30.1318	-16.4632	-46.595	34	5	0	1521	3	10	8
G-K	-4.4427	0.9505	-52.6928	-56.185	27	12	3	2388	0	2	6
H-L	0.0	0.0	-6.7711	-6.7711	11	1	1	450	0	0	0
H-Q	0.0	0.0	-20.0872	-20.0872	17	1	0	1312	0	3	9
I-J	0.0	0.0	-20.0245	-20.0245	19	2	0	1066	0	9	11
I-N	0.0	0.0	-17.1825	-17.1825	7	2	0	509	0	0	1
J-N	-36.3795	-51.3349	-170.95	-258.6645	53	24	6	8158	5	17	28
K-R	0.0	5.5134	-11.2984	-5.785	17	2	0	581	0	5	7
K-U	-54.3152	42.9112	-253.329	-264.733	80	34	4	11513	1	33	39
L-Q	-8.7482	0.0	-44.7479	-53.4961	20	2	4	2109	0	0	7
M-S	-6.0287	4.177	-65.1581	-67.0098	40	6	0	3048	0	12	17
N-S	0.0	-0.348	-25.3874	-25.7354	29	3	1	2020	0	5	10
O-Q	0.0	0.0	-0.0318	-0.0318	4	0	0	7	0	0	0
R-U	0.0	3.0983	-25.2821	-22.1838	23	1	0	1552	0	13	10

Interface residues

• B-E: ARG68E, ASN177B, ASN69E, GLU64E, LEU178B, LYS104B
• C-D: ARG126C, ARG130C, ARG131C, ARG43D, ARG46D, LYS44D, MET128C
• C-E: ALA57E, ARG130C, ARG168C, ARG53E, GLU169C, GLU54E, ILE29E, LYS134C, PHE32E, PRO56E, TRP166C, TYR167C
• C-J: ALA12J, ALA23C, ALA60C, ALA93J, ALA94J, ARG16J, ARG45J, ARG58C, ARG64C, ARG68J, ASN24C, ASN31C, ASP14J, ASP63J, ASP91J, ASP97J, GLN2C, GLN99C, GLN99J, GLU47J, GLU57C, GLU66J, GLY12C, GLY1C, GLY8C, GLY95J, HIS15J, HIS5C, HIS70J, ILE13C, ILE18J, ILE53J, ILE67J, ILE9C, LEU11C, LEU17J, LEU32C, LEU71J, LEU92J, LYS11J, LYS15C, LYS3C, PHE13J, PHE22C, PHE28C, PHE49J, PRO16C, PRO59C, SER19C, THR20C, THR25C, THR69J, TRP17C, TRP21C, TYR65J, VAL14C, VAL4C, VAL96J, VAL98J
• C-N: ALA23C, ALA29C, ALA86N, ALA87N, ALA98N, ARG10C, ARG39C, ARG53C, ARG58C, ARG64N, ARG74N, ARG84N, ARG89N, ASN184C, ASN18C, ASN24C, ASN31C, ASN61N, ASN7C, ASP30C, ASP33C, ASP35C, GLN2C, GLN40C, GLN65N, GLU27C, GLU57C, GLU85N, GLU91N, GLY12C, GLY1C, GLY77N, GLY8C, GLY90N, GLY94N, HIS5C, ILE13C, ILE54C, ILE56C, ILE92N, ILE9C, LEU11C, LEU32C, LEU73N, LEU78N, LEU95N, LYS113C, LYS15C, LYS26C, LYS37C, LYS3C, LYS75N, LYS82N, LYS96N, LYS97N, MET88N, PHE22C, PHE28C, PHE36C, PHE72N, PHE76N, PRO16C, PRO6C, PRO93N, SER19C, SER34C, SER99N, THR185C, THR20C, THR25C, TRP17C, TRP21C, TYR183C, VAL4C, VAL55C, VAL83N
• D-E: ARG111E, GLU201D, HIS197D, THR102E
• E-H: ALA129H, ALA153E, ALA154E, ALA22H, ALA69H, ALA74E, ALA96H, ALA98E, ARG156E, ASN145E, ASN147E, ASN76E, ASP141E, ASP47H, GLN17H, GLN66H, GLN75H, GLN81E, GLN96E, GLU144E, GLU150E, GLU41H, GLU42H, GLU46H, GLU72H, GLY142E, GLY157E, GLY43H, GLY67H, GLY97H, GLY99H, HIS82E, ILE45H, LEU123E, LEU143E, LEU62H, LEU80E, LEU98H, LYS155E, LYS158E, LYS40H, LYS63H, LYS68H, LYS85E, LYS93H, MET146E, MET151E, MET95E, MET95H, PHE44H, PHE65H, PHE94E, PRO149E, PRO83E, PRO97E, SER148E, SER73H, SER99E, THR61H, TYR64H, VAL152E, VAL70H, VAL71H, VAL84E, VAL94H
• F-R: ALA48F, ALA57F, ALA57R, ALA61R, ALA99F, ARG38F, ARG45F, ARG56R, ARG60R, ARG62R, ARG72R, ARG86F, ARG91F, ASN63F, ASP21R, ASP24R, GLN46F, GLN53R, GLU40F, GLU5F, GLU98F, HIS55F, HIS73R, ILE20R, ILE25R, ILE51F, ILE6F, ILE85F, LEU47F, LEU61F, LEU64R, LEU66R, LEU67R, LYS23R, LYS53F, LYS56F, LYS59R, LYS93F, MET62F, MET88F, MET90F, MET9F, PHE8F, PRO50F, PRO68R, SER100F, SER65R, SER87F, THR70R, THR92F, THR97F, TRP42F, TYR22R, TYR49F, TYR4F, TYR59F, TYR63R, TYR69R, VAL60F, VAL7F, VAL89F, VAL96F
• G-I: ALA100I, ALA38G, ALA43I, ARG108I, ARG40I, ARG44I, ARG79I, ARG9G, ASP14G, GLN49I, GLU39G, GLU41I, GLU52I, GLY33G, ILE71I, LEU12G, LYS10G, LYS16G, LYS34G, LYS35G, MET45I, PHE102I, PHE17G, PRO13G, PRO15G, SER36G, SER40G, SER72I, THR37G, THR42I, TYR43G, VAL26G, VAL42G, VAL46I
• G-K: ALA144G, ALA146G, ALA149G, ALA151G, ALA61K, ALA62K, ARG142G, ARG55K, ASN147G, GLN63K, GLU145G, GLY53K, LYS148G, LYS56K, MET143G, PHE150G, PHE51K, PHE60K, PRO59K, PRO87G, PRO90K, SER54K, SER57K, SER82G, THR58K, TYR84G, VAL64K
• H-L: ALA1L, ARG79H, ARG83H, ASN4L, GLY81H, ILE84H, LEU82H, PRO80H, THR2L, VAL3L, VAL7L
• H-Q: ARG79H, ARG83H, ARG87H, GLU90H, GLY34Q, GLY81H, HIS30Q, ILE32Q, ILE84H, LEU82H, LYS29Q, LYS35Q, LYS86H, PHE36Q, PRO80H, TYR33Q, TYR85H
• I-J: ALA61J, ARG112I, ARG123I, ARG48J, ARG62J, ASP60J, ASP63J, GLN64J, GLY116I, ILE53J, LEU117I, LEU52J, LYS113I, LYS114I, LYS59J, PRO124I, THR50J, VAL115I, VAL51J
• I-N: ALA98N, ARG112I, LYS113I, LYS114I, SER99N, TRP100N, VAL115I
• J-N: ALA12J, ALA61J, ALA87N, ALA98N, ARG45J, ARG48J, ARG62J, ARG68J, ARG68N, ARG80N, ARG84N, ASN58J, ASP14J, ASP63J, GLN64J, GLU47J, GLU66J, GLU85N, GLY71N, GLY94N, HIS56J, HIS70J, HIS70N, ILE53J, ILE67J, ILE81N, ILE92N, LEU52J, LEU73N, LEU78N, LEU95N, LYS46J, LYS59J, LYS75N, LYS96N, LYS97N, MET88N, PHE13J, PHE49J, PHE72N, PHE76N, PRO55J, PRO93N, SER54J, SER79N, SER99N, THR50J, THR69J, TRP100N, TYR65J, VAL51J, VAL57J, VAL83N
• K-R: ARG62R, ARG72R, ASP111K, ASP71R, HIS117K, HIS21K, ILE115K, LYS37R, LYS86K, MET84K, PRO114K, THR110K, THR113K, THR70R, TYR69R, VAL112K, VAL85K
• K-U: ALA101K, ALA14U, ALA24K, ALA25U, ALA29U, ARG105K, ARG121K, ARG126K, ARG127K, ARG16U, ARG20U, ARG32U, ARG33U, ARG34U, ARG6U, ARG92K, ARG97K, ASN100K, ASN108K, ASN118K, ASN27K, ASN8U, ASP111K, ASP12U, CYS120K, CYS22U, GLU23U, GLU30U, GLU35U, GLU7U, GLU82K, GLU93K, GLU9U, GLY119K, GLY26U, GLY87K, GLY89K, HIS117K, ILE106K, ILE109K, ILE115K, ILE22K, ILE3U, ILE96K, LEU15U, LEU28U, LYS124K, LYS125K, LYS19U, LYS24U, LYS39U, LYS4U, LYS86K, MET84K, PHE104K, PHE11U, PHE18U, PHE26K, PHE36U, PRO114K, PRO116K, PRO122K, PRO123K, PRO88K, PRO90K, SER21U, SER25K, THR107K, THR110K, THR113K, THR95K, TYR37U, VAL112K, VAL128K, VAL13U, VAL27U, VAL31U, VAL5U, VAL83K, VAL85K
• L-Q: ALA12L, ARG11L, ARG39Q, ARG8L, ASN4L, GLN5L, GLY34Q, HIS30Q, ILE32Q, ILE37Q, LEU6L, LYS35Q, LYS9L, PHE36Q, PRO10L, PRO31Q, THR2L, TYR33Q, VAL3L, VAL7L
• M-S: ALA74S, ARG100M, ARG2S, ARG35S, ARG77S, ARG78M, ARG80S, ARG86M, ARG89M, ARG91M, ARG92M, ARG97M, ASP63S, ASP81M, CYS84M, GLU64S, GLU72S, GLY67S, GLY71S, GLY83M, GLY87M, GLY98M, HIS68S, ILE39S, LEU79M, LEU82M, LEU88M, LEU94M, LYS69S, MET65S, PHE73S, PRO75S, THR101M, THR62S, THR76S, TYR79S, TYR85M, VAL59S, VAL66S, VAL96M
• N-S: ALA43N, ARG36S, ARG40N, ARG52N, ASN34N, ASN42N, ASP11S, ASP32N, GLN48N, GLY7S, HIS13S, ILE10S, LEU12S, LEU15S, LEU45N, LEU47N, LEU4S, LEU50N, LYS46N, LYS5S, LYS6S, PHE40S, PHE9S, PRO8S, SER31N, SER34S, THR49N, VAL33N, VAL44N
• O-Q: ALA81Q, ARG71O, VAL74O, VAL82Q
• R-U: ALA47U, ALA51U, ARG42R, ARG72R, ASP71R, CYS22U, GLU23U, GLU34R, GLY26U, GLY36R, ILE3U, LYS19U, LYS37R, LYS48U, LYS4U, PHE18U, SER21U, SER35R, THR33R, THR70R, VAL27U, VAL39R, VAL5U