3HSH

crystal structure of human collagen xviii trimerization domain (tetragonal crystal form)

• Total interactions analyzed: 15
• Total true interactions: 10
• Strongest Interaction:
  • Chains: D-F
  • Int. Res.: 69
  • Norm. En. per Res.: -6.3095
• Hub Node: A(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-71.0242	-21.8654	-219.744	-312.6336	67	21	8	11330	1	16	13
A-C	-84.5488	-31.2505	-300.107	-415.9062	72	13	8	11062	1	16	14
A-D	0.0	-12.4635	-22.2076	-34.6711	26	1	0	1267	0	6	6
A-F	0.0	-2.3711	-12.1744	-14.5455	12	0	0	186	0	4	1
B-C	-106.6506	-24.3229	-291.915	-422.8885	69	9	8	11310	0	16	13
C-D	-19.062	-13.3276	-65.0392	-97.4288	34	3	0	2318	2	8	10
C-F	0.0	-11.997	-23.5538	-35.5508	25	0	0	1224	0	5	6
D-E	-77.3637	-35.2557	-289.275	-401.8944	69	17	8	11285	1	14	12
D-F	-92.2951	-25.5767	-317.482	-435.3538	69	10	7	11921	0	16	13
E-F	-72.722	-24.1897	-307.775	-404.6867	68	15	8	11606	1	15	12

Interface residues

• A-B: ALA28B, ALA48B, ALA7B, ARG36A, ARG42A, ARG49B, ARG4A, ARG4B, ARG54B, ARG9A, ASN39A, GLN10A, GLN15A, GLN15B, GLN30B, GLN38A, GLN45A, GLN45B, GLU18A, GLU21A, GLU29B, GLU31B, GLU32B, GLU47B, GLY-1A, GLY14A, GLY22A, GLY2A, GLY2B, GLY40A, HIS17A, ILE25A, ILE25B, LEU13A, LEU24A, LEU24B, LEU33A, LEU33B, LEU46A, LEU46B, LEU52B, LEU5B, LYS43A, MET12A, PHE26B, PHE41A, PRO20A, PRO51B, PRO53B, SER0A, SER1A, SER1B, THR50B, TRP23A, TRP23B, TRP6B, TYR34A, TYR34B, VAL16A, VAL19A, VAL27B, VAL35A, VAL37A, VAL3A, VAL3B, VAL44A, VAL44B
• A-C: ALA11A, ALA28A, ALA48A, ALA7A, ARG36C, ARG42C, ARG49A, ARG4A, ARG4C, ARG54A, ARG9C, ASN39C, GLN10C, GLN15A, GLN15C, GLN30A, GLN38C, GLN45A, GLN45C, GLU18C, GLU21C, GLU29A, GLU31A, GLU32A, GLU32C, GLU47A, GLU47C, GLY-1C, GLY14C, GLY22C, GLY2A, GLY2C, GLY40C, HIS17C, ILE25A, ILE25C, LEU13C, LEU24A, LEU24C, LEU33A, LEU33C, LEU46A, LEU46C, LEU52A, LEU5A, LYS43C, MET12A, MET12C, PHE26A, PHE41C, PRO20C, PRO51A, PRO53A, SER0C, SER1A, SER1C, THR50A, TRP23A, TRP23C, TRP6A, TYR34A, TYR34C, VAL16C, VAL19A, VAL19C, VAL27A, VAL35C, VAL37C, VAL3A, VAL3C, VAL44A, VAL44C
• A-D: ALA11A, ALA28A, ALA7A, ARG36D, ARG49A, ARG54A, ASN39D, GLN15D, GLN38D, GLU18D, GLU21D, GLU29A, GLU31A, GLY14D, HIS17D, LEU13D, LEU52A, LEU5A, PHE26A, PRO51A, PRO53A, THR8A, TRP6A, VAL16D, VAL19D, VAL27A
• A-F: ALA28A, ALA28F, ARG54A, ARG54F, GLN30F, GLU29A, GLU29F, LEU52A, LEU52F, PRO53A, PRO53F, THR8F
• B-C: ALA11C, ALA28C, ALA48C, ALA7C, ARG36B, ARG42B, ARG49C, ARG4B, ARG4C, ARG54C, ARG9B, ASN39B, GLN10B, GLN15B, GLN15C, GLN30C, GLN38B, GLN45B, GLN45C, GLU18B, GLU21B, GLU29C, GLU31C, GLU32C, GLU47C, GLY-1B, GLY14B, GLY22B, GLY2B, GLY2C, GLY40B, HIS17B, ILE25B, ILE25C, LEU13B, LEU24B, LEU24C, LEU33B, LEU33C, LEU46B, LEU46C, LEU52C, LEU5C, LYS43B, LYS43C, MET12B, PHE26C, PHE41B, PRO20B, PRO51C, PRO53C, SER0B, SER1B, SER1C, THR50C, TRP23B, TRP23C, TRP6C, TYR34B, TYR34C, VAL16B, VAL19B, VAL27C, VAL35B, VAL37B, VAL3B, VAL3C, VAL44B, VAL44C
• C-D: ARG36C, ARG36D, ASN39C, ASN39D, GLN15C, GLN15D, GLN38C, GLN38D, GLU18C, GLU18D, GLU21C, GLU21D, GLY-1C, GLY-1D, GLY22C, GLY22D, GLY40C, GLY40D, HIS17C, HIS17D, PRO20C, PRO20D, SER0C, SER0D, SER1C, SER1D, TRP23C, TRP23D, VAL16C, VAL16D, VAL19C, VAL19D, VAL37C, VAL37D
• C-F: ALA28F, ALA7F, ARG36C, ARG49F, ARG54F, ASN39C, GLN15C, GLN38C, GLU18C, GLU21C, GLU29F, GLU31F, GLY14C, HIS17C, LEU13C, LEU52F, LEU5F, PHE26F, PRO51F, PRO53F, THR8F, TRP6F, VAL16C, VAL19C, VAL27F
• D-E: ALA28D, ALA48D, ALA7D, ARG36E, ARG42E, ARG49D, ARG4D, ARG4E, ARG54D, ARG9E, ASN39E, GLN10E, GLN15D, GLN15E, GLN30D, GLN38E, GLN45D, GLN45E, GLU18E, GLU21E, GLU29D, GLU31D, GLU32D, GLU32E, GLU47D, GLU47E, GLY-1E, GLY14E, GLY22E, GLY2D, GLY2E, GLY40E, HIS17E, ILE25D, ILE25E, LEU13E, LEU24D, LEU24E, LEU33D, LEU33E, LEU46D, LEU46E, LEU52D, LEU5D, LYS43E, MET12E, PHE26D, PHE41E, PRO20E, PRO51D, PRO53D, SER0E, SER1D, SER1E, THR50D, TRP23D, TRP23E, TRP6D, TYR34D, TYR34E, VAL16E, VAL19E, VAL27D, VAL35E, VAL37E, VAL3D, VAL3E, VAL44D, VAL44E
• D-F: ALA28F, ALA48F, ALA7F, ARG36D, ARG42D, ARG49F, ARG4D, ARG4F, ARG54F, ARG9D, ASN39D, GLN10D, GLN15D, GLN15F, GLN30F, GLN38D, GLN45D, GLN45F, GLU18D, GLU21D, GLU29F, GLU31F, GLU32D, GLU32F, GLU47F, GLY-1D, GLY14D, GLY22D, GLY2D, GLY2F, GLY40D, HIS17D, ILE25D, ILE25F, LEU13D, LEU24D, LEU24F, LEU33D, LEU33F, LEU46D, LEU46F, LEU52F, LEU5F, LYS43D, LYS43F, MET12D, PHE26F, PHE41D, PRO20D, PRO51F, PRO53F, SER0D, SER1D, SER1F, THR50F, TRP23D, TRP23F, TRP6F, TYR34D, TYR34F, VAL16D, VAL19D, VAL27F, VAL35D, VAL37D, VAL3D, VAL3F, VAL44D, VAL44F
• E-F: ALA28E, ALA48E, ALA7E, ARG36F, ARG42F, ARG49E, ARG4E, ARG4F, ARG9F, ASN39F, GLN10F, GLN15E, GLN15F, GLN30E, GLN38F, GLN45E, GLN45F, GLU18F, GLU21F, GLU29E, GLU31E, GLU32E, GLU47E, GLY-1F, GLY14F, GLY22F, GLY2E, GLY2F, GLY40F, HIS17F, ILE25E, ILE25F, LEU13F, LEU24E, LEU24F, LEU33E, LEU33F, LEU46E, LEU46F, LEU52E, LEU5E, LYS43E, LYS43F, MET12F, PHE26E, PHE41F, PRO20F, PRO51E, PRO53E, SER0F, SER1E, SER1F, THR50E, TRP23E, TRP23F, TRP6E, TYR34E, TYR34F, VAL16F, VAL19F, VAL27E, VAL35E, VAL35F, VAL37F, VAL3E, VAL3F, VAL44E, VAL44F