3HOU
complete rna polymerase ii elongation complex i with a t-u mismatch
Total interactions analyzed 435
Total true interactions 60
Strongest Interaction Chains A-B
Int. Res. 776
Norm. En. per Res. -4.4967
Hub Node B(11)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -493.1815 -342.0537 -2654.22 -3489.4552 776 204 67 110816 30 267 232
A-C -23.0342 5.9991 -74.3827 -91.4178 50 11 0 3141 0 16 17
A-D -4.1423 -19.8227 -43.44 -67.405 39 2 1 2401 1 12 5
A-E -91.1377 -87.529 -573.539 -752.2058 198 48 14 23818 6 79 64
A-F -100.5461 -40.6791 -509.825 -651.0501 176 32 15 21476 2 64 53
A-G -21.2511 -67.4647 -122.537 -211.2528 62 13 5 5643 3 19 15
A-H -97.76 -18.0595 -382.875 -498.6945 135 66 12 17456 3 35 33
A-I -80.609 -22.1781 -441.05 -543.8371 141 42 10 17588 6 51 48
A-K -37.2128 -34.442 -261.419 -333.0738 94 14 8 9971 3 23 18
A-P -3.0918 -14.9036 17 ARG209P, ARG28A, ARG36A, ASP186P, ASP189P, ASP204P, ASP205P, ASP85A, GLU190P, GLU206P, GLU208P, GLU277A, GLU280A, HIS281A, HIS83A, LYS192P, LYS34A
B-C -87.7507 -118.3569 -470.368 -676.4755 169 49 5 18173 6 56 60
B-D 0.0 -13.9769 -63.2426 -77.2195 41 2 1 2778 1 16 18
B-E 0.0 0.0 -1.2448 -1.2448 8 4 0 493 0 2 1
B-F 0.0 5.4185 -12.139 -6.7204 24 0 0 593 0 6 7
B-G -4.1684 -3.4001 -8.5421 -16.1106 26 0 0 755 0 7 4
B-H 0.0 0.0 -0.2529 -0.2529 2 0 0 39 0 0 0
B-I -24.6053 -86.6411 -274.131 -385.3774 132 29 2 13784 5 52 52
B-J -23.1218 -33.6743 -397.538 -454.3341 139 39 7 18536 5 35 36
B-K -8.4326 -26.1023 -85.8983 -120.4332 56 7 0 3382 3 15 19
B-L -61.8009 -76.0563 -229.684 -367.5412 112 25 8 11025 12 48 45
B-S 0.0 -4.358 4 ASP118S, ASP166S, HIS1177B, LYS1183B
C-H 0.0 -2.6573 -32.5381 -35.1954 24 1 1 1462 0 8 6
C-J -51.4711 -41.8146 -222.282 -315.5677 105 32 11 12323 9 38 26
C-K -41.4107 -28.5957 -513.676 -583.6824 153 56 18 23386 6 48 47
C-L -36.0457 -36.5948 -169.286 -241.9265 62 14 9 6163 6 24 16
D-G -64.4424 -39.5016 -629.51 -733.454 201 49 23 25664 10 55 50
D-M -5.8917 -9.4452 -43.8565 -59.1934 42 6 0 1939 5 39 22
E-F -6.7972 -19.8507 -23.0426 -49.6905 22 4 0 1216 0 6 4
F-G -3.0415 -11.686 -106.526 -121.2535 54 15 1 4875 1 10 11
G-M 0.0 0.0 -0.7928 -0.7928 3 0 0 79 0 3 0
G-N 0.0 -3.2325 0.0 -3.2325 2 0 0 0 0 0 0
G-S 0.0 17.8933 11 GLU100G, GLU100S, HIS113G, HIS113S, HIS158G, HIS158S, HIS97G, HIS97S, LYS107G, LYS107S, LYS112S
H-K 0.0 0.0 -34.1004 -34.1004 25 2 0 1702 0 5 5
J-L 0.0 0.0 -9.541 -9.541 10 2 0 483 0 0 1
K-L 0.0 8.4237 -0.8648 7.5589 5 0 0 147 0 3 2
M-N -553.4481 -348.8323 -1036.91 -1939.1904 482 89 16 44188 3 113 101
M-O -11.7682 6.9645 7 ASP190O, ASP538M, ASP672M, GLU194O, LYS569M, LYS738M, TYR221O
M-P -5.447 -18.8616 5 ARG13P, ARG14P, GLU16M, GLU226M, LYS16P
M-Q -87.1878 -93.9449 35 ARG1012M, ARG1326M, ARG1345M, ARG167Q, ARG169Q, ARG177Q, ARG200Q, ARG207Q, ARG212Q, ARG857M, ASP1013M, ASP1323M, ASP182Q, ASP853M, ASP871M, GLN174Q, GLU1005M, GLU1342M, GLU148Q, GLU163Q, GLU203Q, GLU870M, GLU945M, HIS147Q, HIS153Q, ILE1341M, LYS201Q, PHE866M, SER205Q, THR1325M, THR1377M, THR204Q, TYR168Q, TYR208Q, VAL863M
M-R -84.1227 -39.0015 23 ARG1055M, ARG135R, ARG92R, ASP140R, ASP1442M, ASP1446M, ASP145R, ASP154R, ASP853M, ASP874M, GLU1062M, GLU149R, GLU496M, GLU500M, GLU89R, HIS1059M, HIS851M, LYS1452M, LYS87R, MET1444M, PRO131R, TYR852M, VAL133R
M-S -18.3048 -58.7112 11 ARG58S, ARG60S, ASP1442M, ASP1446M, ASP65S, GLU1447M, GLU1448M, GLU496M, ILE61S, LYS23S, VAL1443M
M-T -94.5654 -23.1808 27 ALA564M, ARG19T, ARG25T, ARG537M, ASP41T, ASP538M, ASP602M, ASP609M, ASP739M, ASP974M, GLU106T, GLU138T, GLU45T, GLY119T, GLY120T, HIS975M, ILE560M, ILE566M, LYS136T, LYS22T, LYS567M, LYS569M, LYS738M, SER573M, TRP79T, TYR98T, VAL96T
M-U -77.6722 -20.6883 29 ALA699M, ARG1194M, ARG45U, ARG711M, ARG91U, ASP1257M, ASP65U, ASP781M, ASP94U, GLN114U, GLN698M, GLN87U, GLU1151M, GLU1196M, GLU1256M, GLU1264M, GLU18U, GLU47U, GLU712M, HIS46U, ILE1152M, LYS789M, PRO41U, SER112U, SER1150M, THR67U, TYR1154M, TYR44U, VAL43U
M-W -35.0766 -31.9584 16 ARG47W, ASN2W, ASN548M, ASP356M, ASP544M, ASP555M, ASP557M, HIS65W, LYS26W, LYS461M, LYS62W, LYS651M, SER369M, TYR465M, TYR551M, TYR61W
N-O -67.5173 -113.3274 38 ALA1003N, ALA168O, ARG1060N, ARG1067N, ARG34O, ARG35O, ARG848N, ARG852N, ARG969N, ARG995N, ASN31O, ASP181O, ASP190O, ASP60O, ASP847N, ASP950N, ASP998N, GLU1004N, GLU166O, GLU177O, GLU179O, GLU194O, GLU200O, GLU40O, GLU61O, GLU997N, GLY1075N, HIS1076N, HIS167O, HIS188O, HIS65O, LYS1079N, LYS1080N, LYS165O, LYS169O, MET1082N, PHE178O, TYR180O
N-P 0.0 -15.0757 6 ARG1215N, ARG13P, ASP1186N, ASP1190N, ASP1219N, LYS17P
N-R 0.0 -1.9233 3 ASP1223N, ASP140R, LYS72R
N-S -3.0526 -2.9967 4 ASP1190N, LYS1148N, LYS41S, THR64S
N-U -31.5775 -87.0591 22 ARG30U, ARG392N, ARG617N, ARG620N, ARG91U, ARG92U, ASN12U, ASP294N, ASP391N, ASP394N, ASP576N, ASP618N, ASP61U, ASP65U, ASP94U, GLU312N, GLU319N, HIS46U, LYS393N, LYS622N, LYS93U, MET13U
N-V -35.12 -35.9646 17 ARG43V, ARG48V, ARG62V, ARG6V, ARG848N, ARG996N, ASP1009N, CYS10V, GLU1004N, GLU1041N, GLU186N, GLU32V, GLU816N, LYS42V, LYS59V, PHE8V, SER9V
N-W -12.1677 -22.2539 10 ARG6W, ARG995N, ASP1100N, ASP39W, ASP847N, ASP998N, GLU997N, HIS1076N, HIS40W, MET1W
N-X -57.9581 -64.1959 32 ARG120N, ARG42X, ARG47X, ARG54X, ARG63X, ARG70X, ARG852N, ARG904N, ASP106N, ASP847N, ASP894N, ASP896N, GLN66X, GLU104N, GLU116N, GLU33X, GLU68X, GLU875N, GLY902N, HIS110N, HIS53X, ILE55X, LEU56X, LEU898N, LYS193N, LYS28X, LYS58X, LYS892N, LYS962N, THR61X, THR955N, VAL954N
O-T 0.0 -6.3677 4 ASP190O, GLU45T, LYS187O, LYS22T
O-V -48.3387 -44.0568 23 ARG148O, ARG43V, ARG62V, ARG66O, ARG6V, ASN64V, ASP136O, ASP16O, ASP16V, ASP55V, GLU138O, GLU177O, GLU19V, GLU233O, GLU58V, LEU69O, LYS12V, LYS146O, LYS149O, LYS169O, LYS17V, LYS42V, VAL3V
O-W -43.915 -20.6882 27 ARG35O, ARG6W, ASP241O, ASP249O, ASP266O, ASP26O, ASP39W, ASP5W, GLN252O, GLU106W, GLU108W, GLU166O, GLU38W, GLU3O, GLU40O, GLU49W, HIS167O, HIS40W, ILE95W, LYS102W, LYS165O, LYS18W, LYS254O, LYS84W, LYS97W, LYS9O, THR41W
O-X -39.2015 -37.2337 16 ALA69X, ARG60X, ARG70X, ASP47O, ASP60O, GLU166O, GLU52O, GLU61O, GLU68X, HIS167O, HIS65O, LYS169O, PHE67X, VAL49O, VAL51O, VAL65X
P-S -64.9798 -27.3548 34 ARG66P, ARG68P, ARG72P, ARG75S, ASP140P, ASP166S, ASP189P, ASP50S, ASP52S, ASP55S, ASP6S, ASP88S, GLN37P, GLU190P, GLU22P, GLU32P, GLU35S, GLU45P, GLU61P, GLU65P, HIS40P, ILE48P, ILE4S, LEU50P, LYS41S, LYS5S, LYS73S, LYS83S, PHE2S, SER8S, THR5P, TYR147P, TYR167S, VAL48S
Q-R -5.7482 -20.5613 4 ARG169Q, ASP140R, LYS171Q, SER142R
R-S -5.0449 -10.7649 6 ARG135R, ARG58S, ARG60S, ASP145R, GLN100R, GLY66S
W-X 0.0 8.1684 2 ARG6W, ARG70X