3H3Y

fitting of the gp6 crystal structure into 3d cryo-em reconstruction of bacteriophage t4 star-shaped baseplate

• Total interactions analyzed: 66
• Total true interactions: 12
• Strongest Interaction:
  • Chains: G-H
  • Int. Res.: 123
  • Norm. En. per Res.: -1.874
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-19.1087	-17.3941	-193.987	-230.4898	123	47	5	10238	2	43	55
A-L	-38.3865	8.9728	919.363	889.9493	35	207	7	5147	0	4	2
B-C	-26.7838	9.3311	1005.52	988.0673	36	214	7	5276	0	4	2
C-D	-19.1016	-17.3911	-193.951	-230.4437	123	47	5	10238	2	43	55
D-E	-20.984	9.3193	723.974	712.3093	36	214	7	5284	0	4	2
E-F	-19.1197	-17.3943	-193.908	-230.422	123	47	5	10238	2	43	55
F-G	-19.7484	10.2256	1256.98	1247.4573	38	241	7	5525	0	4	2
G-H	-19.1144	-17.3969	-193.988	-230.4993	123	47	5	10237	2	43	55
H-I	-44.2433	9.3887	985.227	950.3724	37	218	7	5326	0	4	2
I-J	-19.1224	-17.3956	-193.915	-230.433	123	47	5	10237	2	43	55
J-K	-45.8518	9.3601	776.414	739.9223	35	223	7	5234	0	4	2
K-L	-19.0925	-17.392	-193.921	-230.4056	123	47	5	10239	2	43	55

Interface residues

• A-B: ALA342B, ALA425A, ALA425B, ALA460A, ALA460B, ALA471B, ALA480A, ALA480B, ALA599A, ARG545A, ARG635A, ARG635B, ASN456A, ASN456B, ASN502A, ASN503A, ASP344B, ASP346B, ASP469A, ASP469B, ASP470A, ASP470B, ASP472A, ASP472B, ASP600A, ASP629A, ASP629B, ASP630A, ASP630B, ASP636B, ASP654B, GLN361B, GLN504A, GLN660A, GLN660B, GLU656A, GLU656B, GLU662A, GLU662B, GLY477A, GLY477B, GLY549A, HIS473A, HIS473B, HIS663A, HIS663B, HIS664A, HIS664B, HIS665A, HIS665B, ILE476A, ILE476B, ILE505A, ILE632A, ILE632B, ILE658A, ILE658B, LEU420A, LEU420B, LEU465A, LEU465B, LEU661A, LEU661B, LYS421A, LYS421B, LYS428A, LYS461A, LYS461B, LYS463A, LYS463B, LYS500A, LYS506A, MET464A, MET464B, PHE363B, PHE455B, PHE459A, PHE459B, PHE633A, PHE633B, PRO598A, PRO627A, PRO657A, SER457B, SER458A, SER458B, SER462A, SER462B, SER474A, SER474B, SER478A, SER478B, SER479A, SER479B, SER659A, SER659B, THR343B, THR347B, THR362B, THR423A, THR423B, THR466A, THR466B, THR628A, THR628B, THR634A, THR634B, TYR345B, TYR424A, TYR424B, TYR447A, TYR447B, TYR467A, TYR467B, TYR597A, VAL422A, VAL422B, VAL468A, VAL468B, VAL475A, VAL475B, VAL631A, VAL631B
• A-L: ALA342A, ALA372A, ALA402A, ALA402L, ASN400A, ASN400L, ASP344A, ASP365A, ASP398L, GLY370A, ILE404A, ILE404L, LEU396L, LEU401A, LEU401L, LYS368A, LYS397L, PHE348A, PHE373A, PRO369A, PRO403A, PRO403L, PRO406A, THR341A, THR343A, THR362A, THR364A, THR405A, THR405L, TYR345A, TYR345L, TYR371A, TYR395L, TYR399L, VAL340A
• B-C: ALA342C, ALA372C, ALA402B, ALA402C, ASN400B, ASN400C, ASP344C, ASP365C, ASP398B, GLY370C, ILE404B, ILE404C, LEU396B, LEU401B, LEU401C, LYS368C, LYS397B, PHE348C, PHE373C, PRO369C, PRO403B, PRO403C, PRO406B, PRO406C, THR341C, THR343C, THR362C, THR364C, THR405B, THR405C, TYR345B, TYR345C, TYR371C, TYR395B, TYR399B, VAL340C
• C-D: ALA342D, ALA425C, ALA425D, ALA460C, ALA460D, ALA471D, ALA480C, ALA480D, ALA599C, ARG545C, ARG635C, ARG635D, ASN456C, ASN456D, ASN502C, ASN503C, ASP344D, ASP346D, ASP469C, ASP469D, ASP470C, ASP470D, ASP472C, ASP472D, ASP600C, ASP629C, ASP629D, ASP630C, ASP630D, ASP636D, ASP654D, GLN361D, GLN504C, GLN660C, GLN660D, GLU656C, GLU656D, GLU662C, GLU662D, GLY477C, GLY477D, GLY549C, HIS473C, HIS473D, HIS663C, HIS663D, HIS664C, HIS664D, HIS665C, HIS665D, ILE476C, ILE476D, ILE505C, ILE632C, ILE632D, ILE658C, ILE658D, LEU420C, LEU420D, LEU465C, LEU465D, LEU661C, LEU661D, LYS421C, LYS421D, LYS428C, LYS461C, LYS461D, LYS463C, LYS463D, LYS500C, LYS506C, MET464C, MET464D, PHE363D, PHE455D, PHE459C, PHE459D, PHE633C, PHE633D, PRO598C, PRO627C, PRO657C, SER457D, SER458C, SER458D, SER462C, SER462D, SER474C, SER474D, SER478C, SER478D, SER479C, SER479D, SER659C, SER659D, THR343D, THR347D, THR362D, THR423C, THR423D, THR466C, THR466D, THR628C, THR628D, THR634C, THR634D, TYR345D, TYR424C, TYR424D, TYR447C, TYR447D, TYR467C, TYR467D, TYR597C, VAL422C, VAL422D, VAL468C, VAL468D, VAL475C, VAL475D, VAL631C, VAL631D
• D-E: ALA342E, ALA372E, ALA402D, ALA402E, ASN400D, ASN400E, ASP344E, ASP365E, ASP398D, GLY370E, ILE404D, ILE404E, LEU396D, LEU401D, LEU401E, LYS368E, LYS397D, PHE348E, PHE373E, PRO369E, PRO403D, PRO403E, PRO406D, PRO406E, THR341E, THR343E, THR362E, THR364E, THR405D, THR405E, TYR345D, TYR345E, TYR371E, TYR395D, TYR399D, VAL340E
• E-F: ALA342F, ALA425E, ALA425F, ALA460E, ALA460F, ALA471F, ALA480E, ALA480F, ALA599E, ARG545E, ARG635E, ARG635F, ASN456E, ASN456F, ASN502E, ASN503E, ASP344F, ASP346F, ASP469E, ASP469F, ASP470E, ASP470F, ASP472E, ASP472F, ASP600E, ASP629E, ASP629F, ASP630E, ASP630F, ASP636F, ASP654F, GLN361F, GLN504E, GLN660E, GLN660F, GLU656E, GLU656F, GLU662E, GLU662F, GLY477E, GLY477F, GLY549E, HIS473E, HIS473F, HIS663E, HIS663F, HIS664E, HIS664F, HIS665E, HIS665F, ILE476E, ILE476F, ILE505E, ILE632E, ILE632F, ILE658E, ILE658F, LEU420E, LEU420F, LEU465E, LEU465F, LEU661E, LEU661F, LYS421E, LYS421F, LYS428E, LYS461E, LYS461F, LYS463E, LYS463F, LYS500E, LYS506E, MET464E, MET464F, PHE363F, PHE455F, PHE459E, PHE459F, PHE633E, PHE633F, PRO598E, PRO627E, PRO657E, SER457F, SER458E, SER458F, SER462E, SER462F, SER474E, SER474F, SER478E, SER478F, SER479E, SER479F, SER659E, SER659F, THR343F, THR347F, THR362F, THR423E, THR423F, THR466E, THR466F, THR628E, THR628F, THR634E, THR634F, TYR345F, TYR424E, TYR424F, TYR447E, TYR447F, TYR467E, TYR467F, TYR597E, VAL422E, VAL422F, VAL468E, VAL468F, VAL475E, VAL475F, VAL631E, VAL631F
• F-G: ALA342G, ALA372G, ALA402F, ALA402G, ARG352F, ASN394F, ASN400F, ASN400G, ASP344G, ASP365G, ASP398F, GLY370G, ILE404F, ILE404G, LEU396F, LEU401F, LEU401G, LYS368G, LYS397F, PHE348G, PHE373G, PRO369G, PRO403F, PRO403G, PRO406F, PRO406G, THR341G, THR343G, THR362G, THR364G, THR405F, THR405G, TYR345F, TYR345G, TYR371G, TYR395F, TYR399F, VAL340G
• G-H: ALA342H, ALA425G, ALA425H, ALA460G, ALA460H, ALA471H, ALA480G, ALA480H, ALA599G, ARG545G, ARG635G, ARG635H, ASN456G, ASN456H, ASN502G, ASN503G, ASP344H, ASP346H, ASP469G, ASP469H, ASP470G, ASP470H, ASP472G, ASP472H, ASP600G, ASP629G, ASP629H, ASP630G, ASP630H, ASP636H, ASP654H, GLN361H, GLN504G, GLN660G, GLN660H, GLU656G, GLU656H, GLU662G, GLU662H, GLY477G, GLY477H, GLY549G, HIS473G, HIS473H, HIS663G, HIS663H, HIS664G, HIS664H, HIS665G, HIS665H, ILE476G, ILE476H, ILE505G, ILE632G, ILE632H, ILE658G, ILE658H, LEU420G, LEU420H, LEU465G, LEU465H, LEU661G, LEU661H, LYS421G, LYS421H, LYS428G, LYS461G, LYS461H, LYS463G, LYS463H, LYS500G, LYS506G, MET464G, MET464H, PHE363H, PHE455H, PHE459G, PHE459H, PHE633G, PHE633H, PRO598G, PRO627G, PRO657G, SER457H, SER458G, SER458H, SER462G, SER462H, SER474G, SER474H, SER478G, SER478H, SER479G, SER479H, SER659G, SER659H, THR343H, THR347H, THR362H, THR423G, THR423H, THR466G, THR466H, THR628G, THR628H, THR634G, THR634H, TYR345H, TYR424G, TYR424H, TYR447G, TYR447H, TYR467G, TYR467H, TYR597G, VAL422G, VAL422H, VAL468G, VAL468H, VAL475G, VAL475H, VAL631G, VAL631H
• H-I: ALA342I, ALA372I, ALA402H, ALA402I, ASN400H, ASN400I, ASP344I, ASP346I, ASP365I, ASP398H, GLY370I, ILE404H, ILE404I, LEU396H, LEU401H, LEU401I, LYS368I, LYS397H, PHE348I, PHE363I, PHE373I, PRO369I, PRO403H, PRO403I, PRO406I, THR341I, THR343I, THR362I, THR364I, THR405H, THR405I, TYR345H, TYR345I, TYR371I, TYR395H, TYR399H, VAL340I
• I-J: ALA342J, ALA425I, ALA425J, ALA460I, ALA460J, ALA471J, ALA480I, ALA480J, ALA599I, ARG545I, ARG635I, ARG635J, ASN456I, ASN456J, ASN502I, ASN503I, ASP344J, ASP346J, ASP469I, ASP469J, ASP470I, ASP470J, ASP472I, ASP472J, ASP600I, ASP629I, ASP629J, ASP630I, ASP630J, ASP636J, ASP654J, GLN361J, GLN504I, GLN660I, GLN660J, GLU656I, GLU656J, GLU662I, GLU662J, GLY477I, GLY477J, GLY549I, HIS473I, HIS473J, HIS663I, HIS663J, HIS664I, HIS664J, HIS665I, HIS665J, ILE476I, ILE476J, ILE505I, ILE632I, ILE632J, ILE658I, ILE658J, LEU420I, LEU420J, LEU465I, LEU465J, LEU661I, LEU661J, LYS421I, LYS421J, LYS428I, LYS461I, LYS461J, LYS463I, LYS463J, LYS500I, LYS506I, MET464I, MET464J, PHE363J, PHE455J, PHE459I, PHE459J, PHE633I, PHE633J, PRO598I, PRO627I, PRO657I, SER457J, SER458I, SER458J, SER462I, SER462J, SER474I, SER474J, SER478I, SER478J, SER479I, SER479J, SER659I, SER659J, THR343J, THR347J, THR362J, THR423I, THR423J, THR466I, THR466J, THR628I, THR628J, THR634I, THR634J, TYR345J, TYR424I, TYR424J, TYR447I, TYR447J, TYR467I, TYR467J, TYR597I, VAL422I, VAL422J, VAL468I, VAL468J, VAL475I, VAL475J, VAL631I, VAL631J
• J-K: ALA342K, ALA372K, ALA402J, ALA402K, ASN400J, ASN400K, ASP344K, ASP365K, ASP398J, GLY370K, ILE404J, ILE404K, LEU396J, LEU401J, LEU401K, LYS368K, LYS397J, PHE348K, PHE373K, PRO369K, PRO403J, PRO403K, PRO406K, THR341K, THR343K, THR362K, THR364K, THR405J, THR405K, TYR345J, TYR345K, TYR371K, TYR395J, TYR399J, VAL340K
• K-L: ALA342L, ALA425K, ALA425L, ALA460K, ALA460L, ALA471L, ALA480K, ALA480L, ALA599K, ARG545K, ARG635K, ARG635L, ASN456K, ASN456L, ASN502K, ASN503K, ASP344L, ASP346L, ASP469K, ASP469L, ASP470K, ASP470L, ASP472K, ASP472L, ASP600K, ASP629K, ASP629L, ASP630K, ASP630L, ASP636L, ASP654L, GLN361L, GLN504K, GLN660K, GLN660L, GLU656K, GLU656L, GLU662K, GLU662L, GLY477K, GLY477L, GLY549K, HIS473K, HIS473L, HIS663K, HIS663L, HIS664K, HIS664L, HIS665K, HIS665L, ILE476K, ILE476L, ILE505K, ILE632K, ILE632L, ILE658K, ILE658L, LEU420K, LEU420L, LEU465K, LEU465L, LEU661K, LEU661L, LYS421K, LYS421L, LYS428K, LYS461K, LYS461L, LYS463K, LYS463L, LYS500K, LYS506K, MET464K, MET464L, PHE363L, PHE455L, PHE459K, PHE459L, PHE633K, PHE633L, PRO598K, PRO627K, PRO657K, SER457L, SER458K, SER458L, SER462K, SER462L, SER474K, SER474L, SER478K, SER478L, SER479K, SER479L, SER659K, SER659L, THR343L, THR347L, THR362L, THR423K, THR423L, THR466K, THR466L, THR628K, THR628L, THR634K, THR634L, TYR345L, TYR424K, TYR424L, TYR447K, TYR447L, TYR467K, TYR467L, TYR597K, VAL422K, VAL422L, VAL468K, VAL468L, VAL475K, VAL475L, VAL631K, VAL631L