3H3V
yeast rnap ii containing poly(a)-signal sequence in the active site
Total interactions analyzed 105
Total true interactions 29
Strongest Interaction Chains B-C
Int. Res. 778
Norm. En. per Res. -4.0236
Hub Node C(10)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
B-C -368.9208 -289.8867 -2471.54 -3130.3475 778 275 62 110309 25 264 236
B-D -20.8186 1.0586 -56.0555 -75.8155 46 8 0 3018 0 17 19
B-E 0.0 -9.3698 -17.3901 -26.7599 26 1 1 1060 0 11 5
B-F -68.6559 -75.3252 -510.523 -654.5041 197 65 15 23728 5 77 61
B-G -83.1304 -58.356 -506.507 -647.9933 177 43 15 22049 3 63 53
B-H -10.0602 -57.4133 -123.225 -190.6985 63 13 5 5745 2 22 17
B-I -42.2554 -3.2105 -355.773 -401.2389 138 60 13 17185 1 36 36
B-J -109.2406 -25.4696 -415.043 -549.7533 138 53 11 17317 5 55 48
B-L -23.1331 -26.5117 -234.915 -284.5598 90 22 8 9944 3 23 19
C-D -57.3852 -99.6811 -438.7 -595.7663 170 57 4 18162 7 59 60
C-E 0.0 -6.5746 -40.1331 -46.7077 33 4 1 2237 0 17 19
C-F 0.0 0.0 -6.5244 -6.5244 8 2 0 348 0 2 1
C-G 0.0 0.0 -10.5016 -10.5016 24 1 0 446 0 5 5
C-H -6.5929 0.0 -6.6613 -13.2541 27 0 0 674 0 7 4
C-I 0.0 0.0 -0.871 -0.871 2 0 0 53 0 0 0
C-J -3.1505 -72.8797 -265.335 -341.3652 135 24 2 13284 5 51 48
C-K -21.3243 -27.6451 -388.422 -437.3914 139 40 5 18460 3 35 36
C-L -7.4409 -10.7987 -76.5365 -94.776 57 11 0 3476 2 15 17
C-M -63.7377 -72.2341 -221.259 -357.2308 108 25 8 10664 10 49 43
D-I 0.0 -4.0845 -32.0003 -36.0847 25 1 1 1539 0 8 7
D-K -48.5637 -13.6306 -237.353 -299.5473 108 44 11 12775 5 38 26
D-L -48.454 -19.7581 -437.154 -505.3661 154 56 18 22930 5 47 45
D-M -24.6233 -35.6929 -141.386 -201.7022 58 13 9 5882 7 22 15
E-H -60.9831 5.9208 -485.08 -540.1423 199 67 23 24840 7 59 52
F-G -7.506 -23.6044 -28.5766 -59.687 21 0 0 1502 1 5 5
G-H -4.4727 -14.6583 -104.802 -123.933 55 16 1 4896 1 10 8
I-L 0.0 0.0 -32.4488 -32.4488 28 3 0 1798 0 5 5
K-M -4.2315 0.0 -8.9915 -13.223 11 2 0 559 0 1 1
L-M 0.0 8.79 -1.8437 6.9463 5 0 0 231 0 3 2