3H1C
crystal structure of polynucleotide phosphorylase (pnpase) core bound to rnase e and tungstate
Total interactions analyzed 276
Total true interactions 52
Strongest Interaction Chains I-J
Int. Res. 74
Norm. En. per Res. -4.6683
Hub Node A(6)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-D -62.7549 -29.5059 -217.589 -309.8498 73 13 8 8551 0 11 10
A-B -70.3854 -94.8791 -399.781 -565.0455 166 31 8 18552 8 40 42
A-C -73.8653 -94.9402 -437.585 -606.3905 173 37 8 19174 7 41 39
A-F -2.2682 -4.2583 -71.322 -77.8485 43 8 2 3087 1 3 2
A-T 0.0 12.4384 -16.9692 -4.5308 38 1 0 1059 0 22 22
A-X 0.0 -11.1536 -17.6561 -28.8097 23 0 0 1128 0 6 6
D-B -7.7257 -14.4155 -58.2552 -80.3964 42 3 1 2579 2 3 2
B-E -62.0042 -29.838 -221.917 -313.7592 75 9 8 8568 2 11 10
B-C -53.1357 -68.9355 -441.18 -563.2512 176 35 7 19641 3 42 43
B-I 0.0 5.4735 -64.7831 -59.3096 44 4 2 3208 5 30 33
B-K 0.0 22.1415 -12.4092 9.7324 31 1 0 852 0 16 16
B-X 0.0 9.5077 -2.7708 6.737 21 0 0 245 0 3 3
E-C -11.3613 -13.9331 -67.1755 -92.4699 42 15 1 3297 2 2 2
E-K -13.5506 0.0 -38.9016 -52.4522 23 4 1 1540 0 4 6
C-F -55.0403 -19.5903 -114.485 -189.1155 74 20 7 8264 0 11 10
C-I 0.0 21.6856 -5.7238 15.9617 24 0 0 525 0 15 14
C-J -11.6349 1.1723 -33.907 -44.3696 24 2 1 1292 0 4 6
C-K 0.0 0.0 3.7376 3.7376 17 11 0 799 0 0 0
C-V 0.0 0.0 -16.7154 -16.7154 18 1 0 799 0 3 5
C-X 0.0 -8.5 -0.148 -8.648 4 0 0 33 0 6 6
G-H -75.6467 -15.6758 -205.305 -296.6275 76 8 9 8429 2 11 10
G-I -85.2051 -81.3164 -416.134 -582.6555 175 41 8 19157 3 41 42
G-K -72.439 -84.3212 -381.252 -538.0122 171 40 8 19044 5 43 43
G-L 0.0 -15.9205 -69.2439 -85.1644 41 2 1 2898 2 3 3
G-M 0.0 -3.5417 -0.3997 -3.9414 8 0 0 45 0 4 5
G-R 0.0 0.0 -32.7612 -32.7612 26 3 0 1337 0 4 6
H-I 0.0 -11.5984 -66.6744 -78.2728 36 5 2 2819 1 3 2
I-J -78.5568 -33.662 -233.237 -345.4558 74 10 8 8770 3 11 10
I-K -63.3017 -95.8735 -443.692 -602.8673 171 28 8 19716 9 39 43
I-M 0.0 15.6159 -43.5167 -27.9008 32 3 0 1924 0 6 6
I-O -14.8782 10.4403 -54.2195 -58.6574 58 11 0 2980 1 29 32
J-K -14.0676 -10.8015 -65.5732 -90.4423 42 10 1 3196 1 2 2
K-L -65.089 -28.9248 -221.284 -315.2978 76 16 6 8674 2 11 10
K-M 0.0 -8.6007 -13.4634 -22.0641 29 0 0 982 0 10 12
M-N -58.0054 -24.8316 -223.986 -306.8231 72 8 7 8369 1 11 10
M-O -94.7652 -95.7284 -419.897 -610.3906 172 34 7 19773 9 41 45
M-R -50.8782 -106.4893 -427.75 -585.1176 172 21 8 19135 6 39 44
M-S 0.0 0.0 -58.2748 -58.2748 41 3 1 2874 0 3 2
N-O -2.3519 -13.3256 -60.1911 -75.8686 42 6 1 2649 2 2 2
O-P -73.5469 -22.1815 -209.587 -305.3153 75 11 8 8364 0 11 10
O-R -61.305 -115.8475 -429.489 -606.6415 171 43 8 19676 8 43 41
P-R -16.5822 -12.9012 -70.6713 -100.1548 42 2 1 2983 2 3 2
R-S -70.4661 -24.7067 -211.085 -306.2578 73 10 7 8136 0 11 10
T-U -65.4168 -47.6798 -212.545 -325.6416 74 11 7 8119 3 11 10
T-V -77.1946 -128.7104 -425.628 -631.5329 169 33 6 19245 9 40 42
T-X -61.1585 -31.046 -259.99 -352.1945 159 24 6 15306 0 35 37
T-Y -2.3245 -12.0083 3 GLU19T, GLY1043Y, HIS1044Y
U-V -10.673 -15.5915 -74.6983 -100.9628 44 4 1 2905 2 2 3
V-W -13.4894 -22.6685 -222.336 -258.4939 75 12 7 8589 0 11 11
V-X -90.3404 -119.7176 -422.148 -632.2061 169 44 7 18885 11 41 44
W-X -4.0682 0.0 -37.3155 -41.3837 40 2 2 2057 0 2 2
X-Y -73.6944 -31.0876 18 ALA1050Y, ALA1052Y, ALA1055Y, ARG1056Y, ARG330X, ASP322X, ASP328X, ASP452X, GLU320X, HIS1044Y, HIS1048Y, HIS1049Y, ILE324X, LEU327X, LYS321X, THR1047Y, THR331X, VAL329X