3H0M
structure of trna-dependent amidotransferase gatcab from aquifex aeolicus
Total interactions analyzed 276
Total true interactions 47
Strongest Interaction Chains B-C
Int. Res. 137
Norm. En. per Res. -5.6583
Hub Node A(4)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -53.8633 -16.707 -373.025 -443.5953 134 18 7 15369 2 21 30
A-C -90.1006 -25.7179 -643.567 -759.3856 209 22 22 27477 3 85 64
A-E -6.3217 -26.5063 -76.4803 -109.3083 91 1 0 4378 4 56 51
A-G 0.0 0.0 -0.0811 -0.0811 6 0 0 36 0 7 6
B-C -158.9783 -86.8815 -529.333 -775.1928 137 48 12 19991 8 57 50
B-G 0.0 0.0 -2.9501 -2.9501 10 0 0 242 0 9 8
B-S 0.0 3.1646 -2.7845 0.3801 9 0 0 236 0 9 8
C-E 0.0 0.0 -0.6989 -0.6989 7 0 0 112 0 7 6
C-G -3.6438 -7.4708 -29.8827 -40.9973 27 0 0 1480 2 14 16
D-E -46.3137 -13.3953 -359.324 -419.033 132 12 6 14997 1 21 29
D-F -102.8129 -32.4127 -656.232 -791.4576 208 24 20 27742 4 84 64
D-H -8.7475 -31.4318 -44.1178 -84.2971 54 9 0 3056 5 46 45
E-F -155.6904 -96.69 -523.053 -775.4334 139 38 10 19890 10 59 51
E-G -16.0304 -42.8433 -44.6324 -103.5061 58 7 0 3135 5 46 45
E-I -6.1264 -33.9221 -42.5751 -82.6236 37 2 0 2041 1 29 20
F-H -6.5146 -40.0341 -40.4022 -86.9509 34 3 0 2038 1 28 19
F-X 0.0 -1.6248 3 ARG4X, ASP3F, GLU5X
G-H -53.5435 -12.6878 -369.683 -435.9143 135 18 6 15423 1 22 29
G-I -86.6337 -34.3773 -636.2 -757.211 210 32 20 27614 6 83 65
G-K -19.1328 -33.4802 -75.4844 -128.0973 88 5 0 4513 5 59 49
H-I -144.321 -84.3119 -535.464 -764.0969 138 36 10 19960 5 57 50
H-M 0.0 0.0 -0.0041 -0.0041 5 0 0 4 0 2 3
I-K 0.0 0.0 -0.1084 -0.1084 5 0 0 39 0 4 4
I-T 0.0 51.8102 4 ARG4I, ASP3I, GLU408T, GLU5I
J-K -48.6055 -11.8902 -366.692 -427.1877 137 22 7 15410 2 22 28
J-L -104.0136 -29.6535 -641.886 -775.5532 209 19 21 27369 5 84 66
J-Q 0.0 -21.9831 -18.9979 -40.981 24 4 0 891 2 17 16
K-L -138.5782 -86.96 -515.067 -740.6052 139 30 10 19548 8 57 49
K-N -13.0436 20.6175 -14.8857 -7.3118 32 1 0 993 0 27 31
M-N -54.4367 -14.5218 -372.488 -441.4465 132 16 6 15275 1 21 28
M-O -90.7211 -25.753 -652.854 -769.3281 209 27 20 27693 5 85 64
N-O -142.1033 -80.9153 -512.008 -735.0266 138 38 9 19564 7 58 50
N-P -23.273 -39.6583 -80.1402 -143.0715 98 2 0 4743 5 57 52
N-R 0.0 0.0 -0.6106 -0.6106 6 0 0 105 0 5 6
O-V -9.2587 -7.642 9 ARG81O, ASP440V, ASP83O, GLU271V, GLU274V, GLU80O, LYS278V, LYS439V, LYS82O
P-Q -59.8478 -13.2573 -374.624 -447.7291 133 14 7 15347 1 21 29
P-R -71.9764 -25.5235 -633.961 -731.4609 210 21 21 27231 4 84 65
P-S 0.0 0.0 -0.0949 -0.0949 6 0 0 39 0 5 6
P-U -7.6862 -12.2172 9 ARG81U, ASP440P, ASP83U, GLU271P, GLU274P, GLU80U, LYS278P, LYS439P, LYS82U
Q-R -156.4715 -87.3915 -523.856 -767.719 138 43 10 19743 6 57 50
S-T -41.4255 -11.1731 20 ALA361S, ARG193S, ARG316S, ARG321S, ARG80T, ASP230S, ASP269T, ASP275T, ASP277T, ASP318S, GLU309S, GLY195S, GLY45T, GLY48T, LEU44T, LYS90T, PRO51T, PRO89T, SER231S, TYR322S
S-U -81.9339 -32.8829 41 ALA14U, ALA337S, ARG15U, ARG325S, ARG338S, ARG340S, ARG350S, ARG376S, ARG61U, ASN77U, ASP341S, ASP44U, GLN372S, GLN53U, GLU17U, GLU228S, GLU22U, GLU334S, GLU342S, GLU46U, GLU49U, GLU54U, GLU57U, GLU78S, GLU80U, HIS452S, HIS66U, ILE52U, LEU43U, LYS19U, LYS229S, LYS235S, LYS349S, LYS370S, LYS373S, LYS41U, LYS73U, THR232S, THR45U, TYR51U, VAL93S
T-U -155.837 -89.4825 48 ARG15U, ARG271T, ARG56T, ARG61U, ARG71U, ARG90U, ASN54T, ASP138T, ASP269T, ASP63U, ASP83U, CYS25T, GLU136T, GLU268T, GLU34T, GLU56U, GLU57U, GLU59T, GLU62U, GLU64U, GLU80U, GLY137T, GLY26T, HIS135T, HIS66U, ILE52T, LEU13U, LEU69U, LYS12U, LYS139T, LYS20T, LYS22T, LYS282T, LYS284T, LYS55T, LYS82U, LYS9U, MET23T, PHE86U, SER68U, THR140T, THR21T, THR58U, VAL142T, VAL39T, VAL53T, VAL88U, VAL91U
T-V -24.5777 -22.9192 22 ARG356T, ASN349T, ASP357T, GLU141V, GLU228T, GLU26V, GLU314T, GLU37V, GLU391T, GLU3T, GLU406V, GLU409V, GLU55V, GLU90V, LYS135V, LYS387T, LYS38V, LYS390T, LYS394T, LYS403V, LYS40V, LYS52V
V-W -58.7438 -16.5162 21 ALA361V, ARG193V, ARG316V, ARG321V, ARG80W, ASN313V, ASP230V, ASP269W, ASP275W, ASP277W, GLU309V, GLY195V, GLY45W, GLY48W, LEU44W, LYS90W, MET46W, PRO51W, PRO89W, SER231V, TYR322V
V-X -84.4913 -19.9833 36 ALA14X, ALA337V, ARG15X, ARG325V, ARG338V, ARG340V, ARG350V, ARG61X, ASN77X, ASP341V, ASP44X, GLN372V, GLU17X, GLU228V, GLU22X, GLU334V, GLU342V, GLU46X, GLU49X, GLU54X, GLU57X, GLU78V, GLU80X, HIS452V, HIS66X, LEU43X, LYS19X, LYS229V, LYS235V, LYS349V, LYS370V, LYS373V, LYS73X, THR45X, TYR51X, VAL93V
W-X -153.7421 -92.0096 41 ARG15X, ARG56W, ARG61X, ARG71X, ARG90X, ASN54W, ASP138W, ASP63X, ASP83X, GLU136W, GLU268W, GLU34W, GLU56X, GLU57X, GLU59W, GLU62X, GLU64X, GLU80X, GLY137W, GLY26W, HIS135W, HIS66X, ILE52W, LEU69X, LYS12X, LYS139W, LYS20W, LYS282W, LYS284W, LYS55W, LYS82X, MET23W, PHE86X, SER68X, THR140W, THR21W, THR58X, VAL142W, VAL39W, VAL53W, VAL88X