3H0G
rna polymerase ii from schizosaccharomyces pombe
Total interactions analyzed 276
Total true interactions 62
Strongest Interaction Chains C-L
Int. Res. 59
Norm. En. per Res. -4.6661
Hub Node A(13)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -361.715 -209.4664 -2053.37 -2624.5514 775 369 44 106680 22 254 238
A-C 0.0 9.9838 -51.8052 -41.8214 48 3 0 2248 0 13 14
A-D -2.4871 7.0232 0.5176 5.0537 62 71 3 5701 2 7 10
A-E -71.3236 -63.9434 -477.091 -612.358 194 59 11 22273 7 81 68
A-F -31.772 -45.4704 -401.699 -478.9414 174 40 15 21054 4 56 46
A-G -3.2386 -29.6251 -76.7753 -109.639 84 37 6 6807 0 15 14
A-H -59.399 -59.0069 -269.521 -387.9269 122 33 5 14009 4 33 37
A-I -23.3458 -63.662 -183.671 -270.6788 133 46 5 12217 1 70 54
A-K -11.4156 -11.8972 -167.811 -191.1238 87 46 1 8690 0 12 11
A-M 0.0 -26.0245 -43.7319 -69.7564 46 1 1 1738 2 7 7
A-O 0.0 -21.1104 4 ARG65A, ASP264O, GLU266O, HIS424A
A-R -9.8629 0.0 2 LEU101R, TYR434A
A-W -5.5973 2.9479 5 ASP79W, GLN84W, GLU21W, GLU417A, LYS68A
B-C -71.3972 -88.884 -437.354 -597.6352 165 54 7 17940 5 59 56
B-D 0.0 0.0 -0.0037 -0.0037 5 0 0 4 0 0 0
B-F 0.0 0.6841 -8.2916 -7.6075 20 2 0 398 0 2 4
B-G 0.0 -12.7292 -17.2445 -29.9737 36 0 0 1185 0 8 8
B-H 0.0 0.0 -0.1404 -0.1404 5 0 0 54 0 0 0
B-I -29.688 -88.9263 -204.034 -322.6483 137 36 1 10797 4 45 50
B-J -53.1075 5.712 -390.706 -438.1014 144 35 7 16946 1 25 27
B-K -6.9748 -28.7199 -70.5903 -106.285 59 4 0 3471 3 14 21
B-L -34.0942 -22.5111 -202.715 -259.3203 111 29 3 10165 3 39 39
B-O -3.3666 -4.69 12 ARG261O, ARG868B, ARG873B, ASP264O, ASP880B, ASP884B, ASP91O, GLU265O, GLU266O, GLU883B, LYS875B, SER869B
B-W -6.8713 0.0 4 GLN919B, GLU78W, ILE94W, LYS1165B
C-H -2.7879 0.0 -30.02 -32.8079 31 4 1 1512 0 3 4
C-J -12.7197 -22.8091 -258.663 -294.1917 111 17 9 12644 5 29 22
C-K -12.7016 18.4192 -387.114 -381.3964 151 37 18 19798 1 64 55
C-L -31.6461 -66.5761 -177.077 -275.2992 59 9 9 6535 6 24 14
C-M 0.0 0.0 -0.0424 -0.0424 3 0 0 17 0 6 5
C-N 0.0 0.0 -0.078 -0.078 2 0 0 13 0 4 2
D-G -49.817 -77.9445 -223.345 -351.1065 144 73 20 16504 7 50 33
E-F 0.0 -6.6523 -14.0782 -20.7305 19 2 0 897 1 7 5
F-G 0.0 2.9721 -72.1294 -69.1573 41 6 2 3872 0 8 7
G-T -5.0333 -2.0739 3 GLU3T, LYS140G, SER4T
J-L 0.0 0.0 -5.5748 -5.5748 11 0 0 246 0 0 1
K-L 0.0 10.919 -6.3642 4.5548 7 1 0 335 0 3 2
K-M 0.0 0.0 -23.279 -23.279 14 3 0 736 0 2 4
L-O 0.0 -23.7433 3 ARG56L, ASP93O, LYS55L
M-N -373.6115 -193.7752 -632.667 -1200.0537 394 94 5 30382 0 98 94
M-O 0.0 9.9838 3 ASP674M, ASP678M, GLU195O
M-P 0.0 1.6661 6 ARG84P, ASP1493M, ASP1501M, ASP23P, GLU29P, LYS87P
M-Q -71.3508 -40.2086 39 ARG1280M, ARG1332M, ARG1351M, ARG1359M, ARG1372M, ARG1384M, ARG162Q, ARG166Q, ARG172Q, ARG195Q, ARG202Q, ARG207Q, ASN1016M, ASP1007M, ASP1012M, ASP134Q, ASP161Q, ASP177Q, ASP859M, ASP868M, ASP877M, GLN169Q, GLU1321M, GLU1348M, GLU143Q, GLU198Q, GLU876M, HIS1386M, HIS142Q, HIS148Q, ILE1009M, ILE1347M, ILE869M, LYS164Q, LYS6Q, LYS952M, PHE872M, THR1331M, TYR203Q
M-R -32.0794 -42.0964 25 ARG125R, ARG504M, ARG80R, ARG82R, ASP106R, ASP135R, ASP1448M, ASP1452M, ASP444M, ASP446M, ASP880M, GLN393M, GLU1065M, GLU140R, GLU384M, GLU501M, GLU502M, GLU506M, GLU509M, LEU123R, LYS515M, LYS77R, PHE1447M, THR105R, TYR1450M
M-S -4.0458 -31.1045 8 ARG14M, ARG61S, ARG76S, ASP1448M, ASP1493M, GLU70S, ILE1449M, VAL62S
M-T -53.6698 -59.0258 19 ARG23T, ARG26T, ARG543M, ASN605M, ASP41T, ASP544M, ASP608M, ASP745M, GLU614M, GLU617M, GLY99T, ILE75T, LEU572M, LYS20T, LYS573M, LYS744M, LYS79T, PRO606M, TYR74T
M-U 0.0 -64.3457 22 ARG17U, ARG23U, ARG45U, ARG717M, ASP1160M, ASP1163M, ASP65U, ASP796M, GLU112U, GLU1154M, GLU1167M, GLU1261M, GLU1262M, GLU1270M, GLU18U, GLU47U, HIS1156M, HIS46U, HIS705M, HIS89U, LYS42U, LYS795M
M-W -11.4037 -11.902 6 ASN2W, ASP362M, ASP563M, HIS64W, LYS25W, TYR471M
N-O -71.4186 -88.8907 36 ALA169O, ALA200O, ARG1049N, ARG1056N, ARG1068N, ARG34O, ARG837N, ARG841N, ARG958N, ARG984N, ASN30O, ASP182O, ASP191O, ASP59O, ASP836N, ASP939N, ASP987N, GLN1073N, GLN775N, GLU180O, GLU195O, GLU201O, GLU39O, GLU60O, GLU986N, HIS1065N, HIS168O, HIS189O, HIS64O, HIS985N, LYS1069N, LYS166O, LYS170O, THR960N, VAL1071N, VAL56O
N-R -8.7834 0.6819 3 HIS1130N, LYS77R, TYR78R
N-S 0.0 -14.3048 2 ARG1176N, ASP154S
N-U -27.7959 -89.3968 24 ARG281N, ARG378N, ARG45U, ARG603N, ARG606N, ARG70U, ARG91U, ARG92U, ASN11U, ASN52U, ASP604N, ASP61U, ASP65U, ASP72U, GLN295N, GLU298N, GLU377N, GLU380N, GLU47U, GLU82U, HIS723N, HIS725N, HIS89U, LYS608N
N-V -40.8878 5.7107 18 ARG47V, ARG6V, ARG837N, ASN811N, ASP171N, ASP998N, CYS10V, GLU179N, GLU805N, HIS52V, LYS1022N, LYS58V, LYS790N, PHE8V, SER9V, THR51V, TYR43V, TYR62V
N-W -6.9774 -28.7009 9 ARG6W, ARG984N, ASP38W, ASP836N, ASP987N, GLU986N, HIS1065N, HIS39W, LYS61W
N-X -34.0295 -22.5134 21 ARG107N, ARG47X, ARG63X, ASP176N, ASP26X, ASP836N, ASP885N, GLU103N, GLU37X, GLU862N, GLU864N, GLU883N, GLU91N, HIS46X, LYS36X, LYS51X, LYS951N, MET49X, PRO890N, THR54X, VAL943N
O-T -2.8034 0.0 2 ASP191O, GLN22T
O-V -12.7366 -22.7863 16 ARG141O, ARG42V, ARG6V, ASP137O, ASP16V, ASP19V, GLU116O, GLU234O, GLU57V, GLY15V, LEU144O, LYS12V, LYS147O, LYS170O, LYS17V, MET68O
O-W -7.0274 17.8491 26 ARG106W, ARG250O, ARG34O, ARG6W, ARG88O, ASP262O, ASP264O, GLU107W, GLU11W, GLU167O, GLU266O, GLU37W, GLU39O, GLU4O, GLU99W, HIS168O, HIS39W, HIS68W, HIS6O, HIS96W, LYS101W, LYS166O, LYS17W, LYS255O, LYS83W, LYS91W
O-X -31.6829 -66.5746 15 ALA62X, ARG53X, ARG56X, ARG63X, ASP46O, ASP59O, GLU167O, GLU49O, GLU60O, GLU61X, HIS168O, HIS64O, LYS170O, PHE60X, VAL48O
P-S -49.8244 -77.9603 18 ARG152S, ARG41P, ARG67P, ARG81S, ARG84S, ASP51S, ASP89S, ASP9P, GLU18P, GLU22P, GLU36S, GLU7S, GLU8P, LEU25P, LYS57P, LYS6S, PHE3S, PRO106S
Q-R 0.0 -6.6541 3 ASP130R, LYS164Q, LYS62R
R-S 0.0 1.4408 2 ARG125R, ARG61S
W-X 0.0 10.9195 2 ARG63X, ARG6W