3GXV

three-dimensional structure of n-terminal domain of dnab helicase from helicobacter pylori and its interactions with primase

• Total interactions analyzed: 6
• Total true interactions: 5
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 70
  • Norm. En. per Res.: -2.8445
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-22.7082	-40.6884	-135.721	-199.1176	70	8	0	5634	2	31	26
A-C	0.0	-8.9567	-66.6828	-75.6395	44	12	4	3855	0	10	12
A-D	0.0	5.5689	-98.0156	-92.4467	44	20	8	4487	0	8	12
B-D	0.0	0.0	-7.1066	-7.1066	18	0	0	577	0	5	1
C-D	0.0	4.3147	-12.7225	-8.4078	20	0	0	953	0	2	9

Interface residues

• A-B: ALA114A, ALA121A, ALA24B, ARG108A, ARG118A, ARG15A, ARG68B, ASN115A, ASN12A, ASN25B, ASN45A, ASN65B, ASN93B, ASP2A, ASP59B, ASP63B, ASP81A, ASP92B, CYS60B, GLN11A, GLN120A, GLN69B, GLN8A, GLN9A, GLU119A, GLU14A, GLU30B, GLU57B, GLU58B, GLU64B, GLU79B, GLU80A, GLU95B, GLY112A, GLY20B, HIS122A, HIS26B, HIS3A, HIS6A, ILE117A, ILE21B, ILE62B, ILE67B, ILE91B, ILE94B, LEU10A, LEU23B, LEU47A, LEU4A, LEU55B, LEU7A, LEU82B, LYS27B, LYS5A, LYS70B, LYS75A, LYS78A, PHE111A, PHE40A, PHE66B, PHE86B, PRO43A, PRO44A, PRO61B, PRO90B, THR116A, TYR41A, TYR42A, VAL22B, VAL83B
• A-C: ALA104A, ALA104C, ALA114A, ALA114C, ALA121C, ARG108A, ARG108C, ARG118A, ARG118C, ASN103A, ASN103C, ASN115C, ASP39A, GLN120A, GLU100A, GLU119C, GLU99A, GLY112A, GLY112C, ILE101C, ILE106A, ILE106C, ILE117A, ILE117C, LEU110A, LEU110C, LEU113A, LEU113C, LEU35A, LYS102A, LYS102C, LYS107A, LYS107C, LYS109A, LYS109C, PHE111A, PHE111C, SER105A, SER105C, SER33A, THR116A, THR116C, VAL34A, VAL98A
• A-D: ALA104A, ALA104D, ALA114A, ALA114D, ALA121A, ALA121D, ARG108A, ARG108D, ARG118A, ARG118D, ASN103A, ASN103D, ASN115A, ASN115D, ASP2A, GLN120A, GLN120D, GLU119A, GLU119D, GLU123D, GLY112A, GLY112D, HIS3A, HIS6A, ILE106A, ILE106D, ILE117A, ILE117D, LEU110A, LEU110D, LEU113A, LEU113D, LEU122D, LEU4A, LEU7A, LYS107A, LYS107D, LYS109A, LYS109D, MET1A, PHE111A, PHE111D, THR116A, THR116D
• B-D: ALA114D, ALA121D, ALA87B, ALA88B, ARG118D, ASN115D, ASP92B, GLU123D, GLU64B, LEU122D, LEU23B, PHE111D, PHE86B, PRO90B, SER19B, SER89B, VAL22B, VAL83B
• C-D: ALA104C, ALA104D, ALA114D, ARG108C, ARG108D, ASN103D, ASN115C, GLU100D, ILE101C, ILE106D, ILE117D, LEU110D, LEU113D, LYS102D, LYS107C, LYS107D, LYS109D, PHE111C, PHE111D, SER105C