3GXR

the crystal structure of g-type lysozyme from atlantic cod (gadus morhua l.) in complex with nag oligomers sheds new light on substrate binding and the catalytic mechanism. structure with nag to 1.7

• Total interactions analyzed: 6
• Total true interactions: 5
• Strongest Interaction:
  • Chains: C-D
  • Int. Res.: 48
  • Norm. En. per Res.: -2.8344
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-17.826	-13.8398	-85.8771	-117.5429	55	5	0	3812	1	9	5
A-C	-5.5291	-3.445	-30.4401	-39.4141	28	3	0	1756	0	8	15
A-D	-4.724	8.8559	-34.4665	-30.3346	42	1	1	2038	0	15	21
B-D	0.0	0.0	-38.477	-38.477	29	3	0	1910	0	6	6
C-D	-9.7988	-16.6857	-109.565	-136.0495	48	5	0	4695	2	20	24

Interface residues

• A-B: ALA179A, ALA181A, ALA33A, ALA38A, ALA76B, ARG32A, ARG44B, ARG75B, ASN112B, ASN187A, ASN78B, ASN82B, ASP29A, ASP41B, ASP7A, GLN10A, GLN182A, GLN39A, GLU12A, GLY15A, GLY30A, GLY43B, GLY87B, GLY89B, HIS35A, ILE80B, ILE8A, LYS145A, LYS185A, LYS186A, LYS47B, PHE81B, PHE95B, PRO85B, PRO86B, SER14A, SER34A, THR13A, THR36A, THR40B, THR83B, THR84B, THR9A, TRP111B, TRP183A, TRP88B, TYR161A, TYR184A, TYR28A, TYR48B, TYR92B, VAL11A, VAL178A, VAL31A, VAL79B
• A-C: ALA64C, ASN187C, ASN53A, ASN53C, ASN54A, ASP62C, GLN182C, GLU114A, GLU46A, GLY188C, ILE52C, LYS185C, LYS186C, LYS47A, LYS49A, LYS49C, LYS57A, PHE189A, PHE189C, PHE51A, PRO63A, PRO63C, SER50A, SER50C, THR9C, TRP183C, TYR184C, TYR48A
• A-D: ALA110D, ALA38A, ALA42A, ARG108D, ARG32A, ARG44A, ASN112D, ASN187A, ASN54D, ASN82D, ASP41A, GLN39A, GLU114D, GLU115D, GLU46A, GLU46D, GLY109D, GLY188A, GLY43A, HIS116D, HIS35A, ILE117D, ILE52D, LEU26A, LEU97D, LYS186A, LYS47D, LYS49A, LYS49D, PHE189A, PHE51D, PHE81D, PRO86D, SER113D, SER50D, THR36A, THR40A, TRP111D, TRP183A, TYR184A, TYR28A, TYR48D
• B-D: ALA42D, ALA76D, ARG103B, ARG167B, ARG44D, ARG75D, ASN78D, ASN82B, ASN91B, ASN93B, ASP41D, ASP90B, GLN39D, GLU46D, GLY43D, GLY89B, LYS102B, LYS25D, LYS47D, MET45D, PHE81D, PRO85B, THR40D, THR83B, THR84B, TRP183D, TRP88B, TYR48D, TYR92B
• C-D: ALA110D, ALA33C, ALA38C, ALA42C, ARG103D, ARG108D, ARG32C, ARG44C, ARG75C, ASN91D, ASN93D, ASP101D, ASP24C, ASP29C, ASP41C, GLN39C, GLU106D, GLU27C, GLU46C, GLY109D, GLY43C, HIS105D, HIS35C, LEU26C, LYS102D, LYS186C, LYS25C, MET37C, MET45C, PHE95D, PRO107D, PRO85D, PRO86D, SER21C, SER34C, THR36C, THR40C, THR83D, THR84D, TRP111D, TRP183C, TRP88D, TYR104D, TYR184C, TYR28C, TYR92D, VAL100D, VAL31C