3GXK

the crystal structure of g-type lysozyme from atlantic cod (gadus morhua l.) in complex with nag oligomers sheds new light on substrate binding and the catalytic mechanism. native structure to 1.9

• Total interactions analyzed: 6
• Total true interactions: 5
• Strongest Interaction:
  • Chains: C-D
  • Int. Res.: 51
  • Norm. En. per Res.: -2.8947
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-14.127	-6.2061	-87.7412	-108.0743	52	4	0	3791	0	7	6
A-C	-4.8571	-9.1644	-42.4302	-56.4517	29	2	0	2093	1	8	15
A-D	-6.0363	10.1806	-37.2595	-33.1152	45	0	1	2071	0	14	20
B-D	0.0	0.0	-51.2125	-51.2125	29	2	0	2211	0	6	7
C-D	-11.6359	-16.0523	-119.939	-147.6272	51	4	0	4983	1	20	25

Interface residues

• A-B: ALA179A, ALA181A, ALA33A, ALA38A, ALA76B, ARG32A, ARG44B, ARG75B, ASN112B, ASN187A, ASN78B, ASN82B, ASP29A, ASP41B, ASP7A, GLN10A, GLN182A, GLN39A, GLU12A, GLY30A, GLY43B, GLY77B, GLY87B, GLY89B, HIS35A, ILE80B, ILE8A, LYS185A, LYS186A, LYS47B, PHE81B, PRO85B, PRO86B, SER14A, SER34A, THR13A, THR36A, THR40B, THR83B, THR84B, THR9A, TRP111B, TRP183A, TRP88B, TYR184A, TYR28A, TYR48B, TYR92B, VAL11A, VAL178A, VAL31A, VAL79B
• A-C: ALA56C, ALA64C, ASN187C, ASN53A, ASN53C, ASN54A, ASP62C, GLN182C, GLU114A, GLU46A, GLY188C, ILE52C, LYS185C, LYS186C, LYS47A, LYS49A, LYS49C, LYS57A, PHE189A, PHE189C, PHE51A, PRO63A, PRO63C, SER50A, SER50C, THR9C, TRP183C, TYR184C, TYR48A
• A-D: ALA110D, ALA38A, ALA42A, ARG108D, ARG32A, ARG44A, ARG44D, ASN112D, ASN187A, ASN54D, ASN82D, ASP41A, GLN39A, GLU114D, GLU115D, GLU46A, GLU46D, GLY109D, GLY188A, GLY43A, GLY43D, HIS116D, HIS35A, ILE117D, ILE52D, LEU26A, LEU97D, LYS186A, LYS47D, LYS49A, LYS49D, MET45D, PHE189A, PHE51D, PHE81D, PRO86D, SER113D, SER50D, THR36A, THR40A, TRP111D, TRP183A, TYR184A, TYR28A, TYR48D
• B-D: ALA42D, ALA76D, ARG103B, ARG167B, ARG44D, ARG75D, ASN78D, ASN82B, ASN91B, ASN93B, ASP41D, ASP90B, GLN39D, GLU46D, GLY43D, GLY89B, LYS102B, LYS25D, LYS47D, MET45D, PHE81D, PRO85B, THR40D, THR83B, THR84B, TRP183D, TRP88B, TYR48D, TYR92B
• C-D: ALA110D, ALA33C, ALA38C, ALA42C, ARG103D, ARG108D, ARG22C, ARG32C, ARG44C, ARG75C, ASN187C, ASN91D, ASN93D, ASP101D, ASP24C, ASP29C, ASP41C, GLN23C, GLN39C, GLU106D, GLU27C, GLU46C, GLY109D, GLY43C, HIS105D, HIS35C, LEU26C, LYS102D, LYS186C, LYS25C, MET37C, MET45C, PHE95D, PRO107D, PRO85D, PRO86D, SER21C, SER34C, THR36C, THR40C, THR83D, THR84D, TRP111D, TRP183C, TRP88D, TYR104D, TYR184C, TYR28C, TYR92D, VAL100D, VAL31C