3GTP
backtracked rna polymerase ii complex with 24mer rna
Total interactions analyzed 78
Total true interactions 23
Strongest Interaction Chains A-B
Int. Res. 757
Norm. En. per Res. -4.0679
Hub Node B(8)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -364.7742 -240.1668 -2474.43 -3079.371 757 192 59 106208 22 258 239
A-C -7.8843 6.0999 -83.7993 -85.5837 54 9 0 3340 0 17 17
A-E -99.9621 -71.8615 -556.744 -728.5677 208 47 14 23711 8 76 61
A-F -60.929 -73.6635 -403.292 -537.8845 153 27 17 18930 2 49 43
A-H -39.9418 -6.9621 -361.003 -407.9069 139 25 12 16988 1 34 33
A-I -103.3635 -69.1336 -403.233 -575.7301 143 37 10 16684 6 53 49
A-K -21.9132 -35.4083 -239.468 -296.7895 90 14 6 9830 3 21 21
B-C -79.4853 -101.5834 -474.496 -655.5647 166 36 5 17742 8 58 58
B-E 0.0 0.0 -0.0028 -0.0028 2 0 0 4 0 0 1
B-F 0.0 0.0 -7.8585 -7.8585 17 1 0 386 0 3 6
B-H 0.0 0.0 -0.9137 -0.9137 2 0 0 58 0 0 0
B-I -19.174 -44.5584 -305.95 -369.6825 136 21 2 13689 2 47 50
B-J -16.4321 -18.3612 -384.203 -418.9963 139 28 6 17758 3 33 36
B-K -13.192 -11.8365 -43.7744 -68.8029 58 12 0 3108 1 14 20
B-L -80.0868 -60.0367 -215.87 -355.9936 107 23 7 10901 8 44 44
C-H 0.0 -7.6486 -25.6567 -33.3053 24 1 1 1264 0 8 5
C-J -32.4097 -55.6437 -226.283 -314.3364 110 27 11 11857 6 42 27
C-K -27.9018 -10.7621 -422.469 -461.1329 152 48 13 21906 3 45 43
C-L -19.8055 -37.6977 -122.637 -180.1402 59 7 9 5307 4 24 16
E-F 0.0 -16.1377 -23.0931 -39.2308 22 2 0 1099 0 5 5
H-K 0.0 0.0 -26.8149 -26.8149 26 1 0 1573 0 5 5
J-L 0.0 0.0 -7.1927 -7.1927 9 0 0 347 0 0 1
K-L 0.0 5.3336 -0.6814 4.6522 5 0 0 130 0 2 2