3GTK
backtracked rna polymerase ii complex with 18mer rna
Total interactions analyzed 78
Total true interactions 22
Strongest Interaction Chains A-B
Int. Res. 765
Norm. En. per Res. -4.056
Hub Node A(7)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -406.8206 -220.0684 -2475.95 -3102.839 765 191 54 106717 25 255 239
A-C -2.717 8.848 -66.772 -60.641 53 8 0 3151 0 17 16
A-E -47.844 -74.7906 -537.779 -660.4136 206 33 12 23458 4 78 60
A-F -47.3618 -45.1303 -441.461 -533.9531 164 18 15 19655 2 57 51
A-H -42.6892 -5.9539 -413.757 -462.4001 145 17 10 17606 3 35 36
A-I -73.2529 -59.3912 -383.028 -515.672 139 24 9 16113 5 57 49
A-K -17.156 -33.5025 -218.972 -269.6304 90 16 6 9404 3 22 19
B-C -57.7762 -102.1746 -448.481 -608.4319 160 32 6 17281 7 56 58
B-F 0.0 0.0 -8.4828 -8.4828 14 2 0 396 0 4 6
B-H 0.0 0.0 -1.7053 -1.7053 3 0 0 75 0 0 0
B-I -2.2298 -51.3211 -298.13 -351.681 134 10 2 13065 1 48 49
B-J -44.8919 -21.7569 -410.461 -477.1098 138 21 7 18090 1 35 35
B-K 0.0 -11.6417 -69.7174 -81.3591 51 5 0 2985 2 16 20
B-L -67.2847 -64.4954 -221.406 -353.1861 103 14 7 10050 5 45 43
C-H 0.0 -9.562 -27.8519 -37.4139 20 0 1 1349 0 8 6
C-J -44.2771 -42.0915 -217.106 -303.4746 107 23 9 11226 5 39 24
C-K -39.7097 -7.2494 -483.553 -530.5121 158 40 15 22204 3 49 42
C-L -15.5003 -36.3352 -135.846 -187.6815 61 14 9 5481 7 21 15
E-F 0.0 -13.1525 -19.6335 -32.786 20 0 0 1029 0 6 5
H-K 0.0 -8.8954 -19.344 -28.2394 25 1 0 1198 0 6 5
J-L 0.0 0.0 -5.468 -5.468 10 0 0 387 0 0 1
K-L 0.0 5.5228 -0.3064 5.2165 5 0 0 90 0 3 2