3GTJ
backtracked rna polymerase ii complex with 13mer rna
Total interactions analyzed 78
Total true interactions 22
Strongest Interaction Chains A-B
Int. Res. 750
Norm. En. per Res. -3.8958
Hub Node A(7)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -364.2105 -224.9676 -2332.68 -2921.858 750 148 53 101479 22 246 233
A-C -3.0693 8.4971 -61.5437 -56.1159 50 7 0 3016 0 17 15
A-E -48.6975 -76.7719 -510.973 -636.4423 201 30 11 22365 4 76 56
A-F -36.2188 -31.6555 -411.637 -479.5113 162 16 14 18628 2 54 50
A-H -24.3724 -5.1069 -353.603 -383.0823 141 21 10 16714 2 33 35
A-I -88.2236 -59.1022 -353.767 -501.0929 138 23 8 15347 4 52 48
A-K -19.5008 -33.3388 -206.9 -259.7396 91 13 6 9031 3 22 17
B-C -56.7128 -94.0698 -427.523 -578.3056 159 22 5 16443 6 53 56
B-F 0.0 0.0 -7.7991 -7.7991 14 1 0 368 0 4 6
B-H 0.0 0.0 -1.2747 -1.2747 3 0 0 68 0 0 0
B-I -2.3032 -41.7778 -275.339 -319.42 130 9 2 12334 1 45 47
B-J -52.1155 -18.8562 -395.72 -466.6917 135 15 7 17389 1 33 33
B-K -4.9716 -12.3256 -69.5941 -86.8914 49 4 0 2840 1 16 20
B-L -63.9632 -59.4657 -197.651 -321.0799 99 12 6 9410 5 44 43
C-H 0.0 -9.3066 -24.4409 -33.7475 20 0 1 1268 0 8 6
C-J -37.2841 -37.7758 -199.149 -274.2089 105 20 9 10777 4 38 24
C-K -31.2025 -9.9191 -437.911 -479.0326 155 35 16 21100 4 48 41
C-L -15.6953 -35.0236 -130.309 -181.0279 58 11 9 5316 6 21 13
E-F 0.0 -13.0798 -18.4302 -31.51 19 0 0 954 0 5 5
H-K 0.0 -8.4573 -18.9633 -27.4206 24 0 0 1139 0 5 5
J-L 0.0 0.0 -5.2848 -5.2848 10 0 0 384 0 0 1
K-L 0.0 4.2296 -0.2421 3.9875 5 0 0 73 0 3 2