3GTG
backtracked rna polymerase ii complex with 12mer rna
Total interactions analyzed 78
Total true interactions 22
Strongest Interaction Chains A-B
Int. Res. 761
Norm. En. per Res. -3.8631
Hub Node A(7)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -371.3198 -208.0068 -2360.53 -2939.8567 761 203 54 105122 21 258 244
A-C 0.0 7.8546 -74.0103 -66.1557 52 6 0 3216 0 17 15
A-E -62.9946 -75.3185 -546.718 -685.0312 207 39 15 23488 4 77 61
A-F -42.052 -47.9102 -421.648 -511.6102 164 18 16 19553 2 55 52
A-H -35.4896 -3.3359 -363.903 -402.7285 142 20 10 17126 3 35 38
A-I -74.8562 -54.0108 -376.267 -505.134 144 18 7 15861 5 52 51
A-K -10.5978 -38.5382 -235.629 -284.7651 92 13 6 9867 3 23 21
B-C -64.445 -111.0245 -442.338 -617.8075 163 33 4 17374 8 57 59
B-F 0.0 1.5113 -8.7001 -7.1888 14 2 0 407 0 4 6
B-H 0.0 0.0 -0.6698 -0.6698 3 0 0 53 0 0 0
B-I -7.2381 -51.7613 -300.254 -359.2534 133 11 2 12963 2 50 50
B-J -29.9958 -15.2155 -398.929 -444.1403 137 22 6 17642 3 37 36
B-K -3.448 -6.0851 -67.1831 -76.7162 51 8 0 3006 1 16 20
B-L -35.3972 -51.8932 -190.965 -278.2555 105 11 7 9747 4 45 45
C-H 0.0 -7.9034 -24.75 -32.6534 22 0 1 1248 0 8 6
C-J -38.7659 -55.8093 -215.283 -309.8582 112 23 11 11570 5 40 27
C-K -26.3472 -14.7164 -423.028 -464.0916 154 30 17 20954 6 48 44
C-L -38.8266 -31.8805 -147.842 -218.5491 57 9 9 5489 5 21 14
E-F 0.0 -12.463 -16.7048 -29.1678 19 0 0 1003 0 6 5
H-K 0.0 -9.0494 -18.0827 -27.1321 23 1 0 1212 0 6 5
J-L 0.0 0.0 -7.4054 -7.4054 10 0 0 451 0 1 1
K-L 0.0 2.6309 -0.3522 2.2787 5 0 0 85 0 3 2