3GPJ
crystal structure of the yeast 20s proteasome in complex with syringolin b
Total interactions analyzed 378
Total true interactions 96
Strongest Interaction Chains H-I
Int. Res. 142
Norm. En. per Res. -5.1818
Hub Node A(8)
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Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -47.3379 -17.0994 -415.708 -480.1454 136 26 7 16033 1 23 21
A-C 0.0 -11.2157 -20.2952 -31.5109 12 0 1 646 0 2 2
A-D 0.0 0.0 -2.0579 -2.0579 5 0 0 114 0 2 1
A-E 0.0 0.0 -12.766 -12.766 10 5 0 470 0 1 0
A-F -4.4161 0.0 -29.0783 -33.4944 17 3 0 1132 0 0 1
A-G -71.2114 -41.2847 -405.415 -517.9111 131 27 14 15976 3 22 27
A-H -45.4589 -26.5867 -167.6 -239.6456 70 9 3 6401 5 19 17
A-I -20.2377 -2.5023 -120.809 -143.549 52 7 2 4713 2 15 21
B-C -71.6682 21.0527 -532.87 -583.4855 147 49 10 19473 1 34 38
B-D -7.0867 -16.2466 -18.6889 -42.0223 13 1 0 805 2 8 5
B-E 0.0 -19.5385 -24.7375 -44.276 14 2 0 799 0 4 2
B-F 0.0 0.0 -25.3465 -25.3465 18 0 0 1025 0 1 0
B-G 0.0 4.2844 -34.3255 -30.0411 16 0 2 1150 0 2 5
B-H 0.0 14.2732 -0.9338 13.3393 9 0 0 76 0 3 4
B-I 0.0 -4.9954 -111.013 -116.0084 48 6 0 4821 0 15 16
B-J -18.2286 -32.7863 -128.959 -179.9739 46 12 2 4756 2 20 23
C-D -71.3002 -37.0086 -383.682 -491.9907 120 26 8 14503 1 28 29
C-E 0.0 0.0 -0.0495 -0.0495 3 0 0 18 0 1 0
C-J -9.1569 -10.6134 -80.2815 -100.0518 44 8 2 4029 2 17 13
C-K -32.6518 -39.4008 -53.5119 -125.5645 33 3 1 2361 8 29 23
D-E -47.7687 -40.7637 -303.709 -392.2414 120 19 7 12046 2 34 33
D-G 0.0 0.0 -0.0019 -0.0019 2 0 0 2 0 0 0
D-K -8.7997 -49.8155 -94.5359 -153.1511 51 7 1 4283 6 27 26
D-L -5.9447 -32.6454 -128.022 -166.6121 50 1 0 4409 4 30 26
E-F -72.2887 -33.7678 -402.223 -508.2795 132 24 10 14900 2 30 34
E-L -9.1034 -24.0546 -76.0052 -109.1633 42 5 0 3182 3 13 19
E-M -10.8594 -24.4335 -142.954 -178.2468 52 1 3 5241 2 28 13
F-G -90.8334 -21.0996 -418.817 -530.75 131 27 9 15436 4 27 26
F-M -19.2379 -66.4898 -99.3128 -185.0405 55 7 2 3908 5 33 22
F-N -16.6688 -20.3556 -103.204 -140.2284 51 1 2 4504 2 14 10
G-H -22.1781 -76.5703 -178.954 -277.7024 61 12 1 6406 11 14 21
G-N -12.6907 -27.3662 -81.3809 -121.4377 45 1 4 3630 1 12 15
G-1 -2.905 0.0 -5.3483 -8.2532 13 5 0 529 0 3 4
H-I -164.5326 -157.943 -413.341 -735.8166 142 17 14 15733 10 43 34
H-N -36.4334 -42.0769 -95.0294 -173.5397 64 3 2 3685 3 16 7
H-Y 0.0 0.0 -13.7136 -13.7136 9 1 1 605 0 0 0
H-Z -81.0533 -67.259 -384.714 -533.0263 112 26 6 14759 4 35 37
H-1 -2.7111 -38.783 -213.593 -255.0871 94 6 5 9200 1 20 18
I-J -10.1302 -58.2259 -115.566 -183.922 72 6 4 5826 4 14 11
I-Y -81.1726 -58.2078 -268.134 -407.5145 92 16 5 10122 6 21 21
I-Z -25.3359 -33.5194 -198.852 -257.7073 74 11 1 7759 3 20 20
J-K -44.0098 -34.932 -142.358 -221.2998 67 11 4 6215 3 22 22
J-X -56.419 -0.1564 -167.026 -223.6015 60 18 4 6939 0 18 30
J-Y -39.884 -45.6778 -230.563 -316.1249 78 13 2 8548 5 22 19
K-L -41.3766 -38.6524 -164.905 -244.934 80 8 4 5847 3 24 14
K-V 0.0 0.0 -14.0759 -14.0759 9 2 1 630 0 0 1
K-W -85.9725 -57.7167 -269.534 -413.2232 92 17 5 10157 6 21 21
K-X -37.8821 -44.2452 -229.468 -311.5953 79 13 2 8658 5 22 19
L-M -67.9498 -17.7127 -236.839 -322.5015 90 18 6 9503 10 27 23
L-V -75.7757 -66.6048 -380.604 -522.9845 113 27 6 14799 4 35 38
L-W -25.7182 -33.5247 -198.291 -257.5339 74 11 1 7745 3 20 20
M-N -13.6614 -23.0102 -138.242 -174.9135 65 7 1 6074 2 22 14
M-U 0.0 0.0 -6.5995 -6.5995 13 3 0 520 0 3 4
M-V -4.9595 -40.1498 -210.108 -255.2174 94 7 5 9175 1 20 18
M-2 -117.1967 24.1722 -394.723 -487.7475 114 25 10 14441 4 30 31
N-1 -120.7554 24.2476 -396.771 -493.2789 114 25 10 14409 4 30 31
N-2 -46.9643 -17.9025 -201.093 -265.9598 53 23 3 6810 4 12 12
O-P -53.4318 -15.6962 -424.848 -493.976 137 36 7 16383 1 23 22
O-Q 0.0 -12.0243 -22.643 -34.6673 14 0 1 684 0 2 2
O-R -8.2949 0.0 -2.1108 -10.4057 5 0 0 130 0 2 1
O-S 0.0 0.0 -12.6999 -12.6999 10 3 0 467 0 1 0
O-T -3.8528 0.0 -25.1771 -29.0299 17 2 0 1058 0 0 1
O-U -73.9933 -40.2414 -425.228 -539.4628 132 33 14 16632 3 23 28
O-V -47.098 -26.889 -161.798 -235.785 68 9 3 6416 5 19 17
O-W -16.0863 -2.8517 -116.017 -134.955 52 3 2 4559 2 15 19
P-Q -53.4458 15.1761 -476.453 -514.7227 140 33 8 18220 1 32 37
P-R -7.4814 -16.5698 -21.6783 -45.7295 14 4 0 848 2 8 6
P-S 0.0 -19.5267 -24.6811 -44.2078 14 3 0 808 0 4 2
P-T 0.0 0.0 -24.1201 -24.1201 18 0 0 1015 0 1 0
P-U 0.0 4.1769 -32.9526 -28.7757 17 0 2 1128 0 2 5
P-V 0.0 14.689 -1.1685 13.5205 9 0 0 87 0 3 4
P-W 0.0 -4.9998 -110.338 -115.3378 50 6 0 4826 0 17 16
P-X -18.0241 -32.2101 -129.238 -179.4722 46 15 3 4756 2 21 23
Q-R -70.5971 -36.7803 -379.971 -487.3484 119 24 8 14412 1 28 29
Q-S 0.0 0.0 -0.0498 -0.0498 3 0 0 19 0 1 0
Q-X -9.9643 -10.9054 -82.9189 -103.7886 44 5 2 3917 1 16 12
Q-Y -28.1265 -38.7867 -53.5996 -120.5128 33 2 1 2361 8 29 23
R-S -55.2934 -40.787 -317.6 -413.6804 120 28 7 12267 2 34 33
R-U 0.0 0.0 -0.002 -0.002 2 0 0 2 0 0 0
R-Y -9.8734 -51.9413 -95.0565 -156.8712 50 8 1 4273 6 26 26
R-Z -3.6519 -34.9216 -129.92 -168.4935 50 0 0 4445 4 30 26
S-T -69.3045 -31.8462 -409.096 -510.2467 132 25 11 14991 2 30 34
S-Z -9.3608 -24.3591 -76.164 -109.8838 42 6 0 3207 3 13 19
S-1 -2.6378 -24.4064 -145.319 -172.3632 52 1 3 5354 2 28 13
T-U -89.1127 -20.5291 -411.88 -521.5218 132 29 9 15380 4 27 26
T-1 -18.4788 -24.7622 -97.196 -140.437 55 8 2 3847 5 32 22
T-2 -14.1993 -20.6514 -103.645 -138.4957 51 1 3 4512 2 14 10
U-V -21.676 -76.3836 -181.62 -279.6796 61 12 1 6339 11 14 21
U-2 -10.8973 -26.6244 -83.4232 -120.9449 46 0 4 3670 1 12 15
V-W -162.9399 -158.7437 -410.575 -732.2586 142 18 14 15715 11 43 34
V-2 -34.054 -40.8124 -95.3142 -170.1806 64 2 2 3712 3 16 7
W-X -7.2814 -56.2957 -115.835 -179.4121 72 5 4 5734 4 14 11
X-Y -45.7034 -34.1839 -147.879 -227.7663 67 13 4 6236 3 22 21
Y-Z -43.0648 -33.4117 -164.936 -241.4124 80 8 4 5858 3 24 14
Z-1 -74.2454 -20.8887 -237.252 -332.3861 90 21 6 9603 10 27 23
1-2 -13.5458 -22.5753 -137.694 -173.8151 64 5 1 6040 2 22 14