3GP9

crystal structure of the mimivirus ndk complexed with gdp

• Total interactions analyzed: 15
• Total true interactions: 6
• Strongest Interaction:
  • Chains: A-E
  • Int. Res.: 56
  • Norm. En. per Res.: -3.4737
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-C	-37.0636	-18.6254	-133.631	-189.32	56	8	0	5530	0	25	18
A-E	-44.0981	-15.6602	-134.768	-194.5263	56	8	0	5501	0	25	19
B-D	-39.2473	-12.7165	-132.456	-184.4198	57	9	0	5633	0	25	19
B-F	-41.4514	-12.4841	-127.295	-181.2305	55	7	0	5381	0	24	19
C-E	-44.0937	-17.8631	-117.8	-179.7569	57	8	0	5027	0	24	18
D-F	-39.4331	-17.0716	-124.885	-181.3898	58	7	0	5535	0	24	18

Interface residues

• A-C: ALA103A, ALA81C, ARG15A, ARG24A, ARG24C, ARG86C, ARG87C, ARG99A, ASN104A, ASN29C, ASN91A, ASN91C, ASP101A, ASP101C, ASP105A, ASP11A, ASP80C, GLN2C, GLN89C, GLU108A, GLU14A, GLU20A, GLU26C, GLU77C, GLY0C, GLY100A, GLY23C, GLY78C, GLY90C, GLY96A, GLY96C, ILE106A, ILE25C, ILE85C, ILE92A, ILE98A, ILE98C, LEU102A, LEU110A, LEU17A, LEU1C, LEU88C, LEU93A, LYS27C, LYS28C, LYS31C, LYS84C, PHE30C, PRO95A, PRO95C, SER83C, THR79C, THR94A, THR94C, THR97A, THR97C
• A-E: ALA103E, ALA81A, ARG15E, ARG24A, ARG24E, ARG86A, ARG87A, ARG99E, ASN104E, ASN29A, ASN91A, ASN91E, ASP101A, ASP101E, ASP105E, ASP11E, ASP80A, GLN2A, GLN89A, GLU108E, GLU20E, GLU26A, GLU77A, GLY0A, GLY100E, GLY23A, GLY78A, GLY90A, GLY96A, GLY96E, ILE106E, ILE25A, ILE85A, ILE92E, ILE98A, ILE98E, LEU102E, LEU110E, LEU17E, LEU1A, LEU88A, LEU93E, LYS27A, LYS28A, LYS31A, LYS84A, PHE30A, PRO95A, PRO95E, SER16E, SER83A, THR79A, THR94A, THR94E, THR97A, THR97E
• B-D: ALA103B, ALA81D, ARG15B, ARG24B, ARG24D, ARG86D, ARG87D, ARG99B, ASN104B, ASN29D, ASN91B, ASN91D, ASP101B, ASP101D, ASP105B, ASP11B, ASP80D, GLN2D, GLN89D, GLU108B, GLU14B, GLU20B, GLU26D, GLU77D, GLY0D, GLY100B, GLY23D, GLY78D, GLY90D, GLY96B, GLY96D, ILE106B, ILE25D, ILE85D, ILE92B, ILE98B, ILE98D, LEU102B, LEU110B, LEU17B, LEU1D, LEU88D, LEU93B, LYS27D, LYS28D, LYS31D, LYS84D, PHE30D, PRO95B, PRO95D, SER16B, SER83D, THR79D, THR94B, THR94D, THR97B, THR97D
• B-F: ALA103F, ALA81B, ARG15F, ARG24B, ARG24F, ARG86B, ARG87B, ARG99F, ASN104F, ASN29B, ASN91B, ASN91F, ASP101B, ASP101F, ASP105F, ASP11F, ASP80B, GLN2B, GLN89B, GLU108F, GLU20F, GLU26B, GLU77B, GLY100F, GLY23B, GLY78B, GLY90B, GLY96B, GLY96F, ILE106F, ILE25B, ILE85B, ILE92F, ILE98B, ILE98F, LEU102F, LEU110F, LEU17F, LEU1B, LEU88B, LEU93F, LYS27B, LYS28B, LYS31B, LYS84B, PHE30B, PRO95B, PRO95F, SER16F, SER83B, THR79B, THR94B, THR94F, THR97B, THR97F
• C-E: ALA103C, ALA81E, ARG15C, ARG24C, ARG24E, ARG86E, ARG87E, ARG99C, ASN104C, ASN29E, ASN91C, ASN91E, ASP101C, ASP101E, ASP105C, ASP11C, ASP80E, GLN2E, GLN89E, GLU108C, GLU14C, GLU20C, GLU26E, GLU77E, GLY0E, GLY100C, GLY100E, GLY23E, GLY78E, GLY90E, GLY96C, GLY96E, ILE106C, ILE25E, ILE85E, ILE92C, ILE98C, ILE98E, LEU102C, LEU110C, LEU17C, LEU1E, LEU88E, LEU93C, LYS27E, LYS28E, LYS31E, LYS84E, PHE30E, PRO95C, PRO95E, SER83E, THR79E, THR94C, THR94E, THR97C, THR97E
• D-F: ALA103D, ALA81F, ARG15D, ARG24D, ARG24F, ARG86F, ARG87F, ARG99D, ASN104D, ASN29F, ASN91D, ASN91F, ASP101D, ASP101F, ASP105D, ASP11D, ASP80F, GLN2F, GLN89F, GLU108D, GLU14D, GLU20D, GLU26F, GLU77F, GLY0F, GLY100D, GLY23F, GLY78F, GLY90F, GLY96D, GLY96F, ILE106D, ILE21D, ILE25F, ILE85F, ILE92D, ILE98D, ILE98F, LEU102D, LEU110D, LEU17D, LEU1F, LEU88F, LEU93D, LYS27F, LYS28F, LYS31F, LYS84F, PHE30F, PRO95D, PRO95F, SER16D, SER83F, THR79F, THR94D, THR94F, THR97D, THR97F