3G8Q

a cytidine deaminase edits c-to-u in transfer rnas in archaea

• Total interactions analyzed: 6
• Total true interactions: 5
• Strongest Interaction:
  • Chains: A-D
  • Int. Res.: 176
  • Norm. En. per Res.: -3.8126
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-C	0.0	0.0	-0.1051	-0.1051	3	0	0	19	0	1	4
A-D	-119.886	-47.9266	-503.205	-671.0177	176	37	13	21139	9	50	41
B-C	-113.2485	-39.1962	-487.178	-639.6227	176	46	12	20878	11	49	39
B-D	0.0	6.5335	-5.571	0.9625	17	0	0	293	0	7	16
C-D	-64.0651	-41.2866	-102.338	-207.6897	78	7	7	4906	8	75	83

Interface residues

• A-C: ALA6A, GLU203C, GLY7A
• A-D: ALA138D, ALA139A, ALA139D, ALA152D, ALA155D, ALA157A, ALA40D, ALA64D, ALA6A, ALA6D, ALA80A, ALA97A, ALA97D, ARG140A, ARG140D, ARG148A, ARG164A, ARG189A, ARG22D, ARG65A, ARG65D, ARG87A, ARG87D, ARG89D, ARG98A, ARG98D, ASN129A, ASN129D, ASN160A, ASP109A, ASP109D, ASP11A, ASP11D, ASP136A, ASP136D, ASP153D, CYS143A, CYS143D, GLN8A, GLN8D, GLU102A, GLU102D, GLU105A, GLU105D, GLU110A, GLU110D, GLU134A, GLU134D, GLU135A, GLU135D, GLU159A, GLU166D, GLU183A, GLU184A, GLU184D, GLY100A, GLY113A, GLY127A, GLY127D, GLY128A, GLY128D, GLY147A, GLY147D, GLY163A, GLY7A, GLY7D, GLY81A, GLY86A, GLY86D, GLY88D, GLY90D, GLY92D, HIS107A, HIS107D, ILE154D, ILE167D, LEU112A, LEU112D, LEU124D, LEU132A, LEU132D, LEU144A, LEU144D, LEU145A, LEU145D, LEU161A, LEU180A, LEU181A, LEU185A, LEU185D, LEU5A, LEU5D, LEU68D, LEU85D, LEU91A, LEU91D, LEU96A, LEU96D, LYS13A, LYS13D, LYS182A, LYS21D, LYS2A, LYS2D, MET1A, MET1D, PHE126A, PHE126D, PHE188A, PHE188D, PRO108A, PRO108D, PRO111A, PRO111D, PRO130A, PRO130D, PRO156A, PRO156D, PRO158A, PRO186A, PRO186D, PRO93A, PRO93D, SER162A, SER4A, SER4D, SER99A, THR125A, THR133A, THR133D, THR146A, THR146D, THR23D, THR25D, THR63D, THR9A, THR9D, TYR114A, TYR114D, TYR131A, TYR131D, TYR142A, TYR142D, TYR84A, TYR84D, TYR94A, TYR94D, TYR95A, TYR95D, VAL101A, VAL101D, VAL103A, VAL103D, VAL104A, VAL104D, VAL106A, VAL106D, VAL10A, VAL10D, VAL12A, VAL12D, VAL137A, VAL137D, VAL141A, VAL141D, VAL165A, VAL165D, VAL187A, VAL187D, VAL24D, VAL3A, VAL3D, VAL82A, VAL82D, VAL83A, VAL83D
• B-C: ALA138C, ALA139B, ALA139C, ALA152C, ALA155C, ALA157B, ALA40C, ALA64C, ALA6B, ALA6C, ALA80B, ALA97B, ALA97C, ARG140B, ARG140C, ARG148B, ARG164B, ARG189B, ARG22C, ARG65B, ARG65C, ARG72B, ARG87B, ARG87C, ARG89C, ARG98B, ARG98C, ASN129B, ASN129C, ASN160B, ASP109B, ASP109C, ASP11B, ASP11C, ASP136B, ASP136C, ASP153C, CYS143B, CYS143C, GLN8B, GLN8C, GLU102B, GLU102C, GLU105B, GLU105C, GLU110B, GLU110C, GLU134B, GLU134C, GLU135B, GLU135C, GLU159B, GLU166C, GLU183B, GLU184B, GLU184C, GLY100B, GLY113B, GLY127B, GLY127C, GLY128B, GLY128C, GLY147B, GLY163B, GLY7B, GLY7C, GLY81B, GLY81C, GLY86B, GLY86C, GLY88B, GLY88C, GLY90C, GLY92C, HIS107B, HIS107C, ILE154C, ILE167C, LEU112B, LEU112C, LEU124B, LEU124C, LEU132B, LEU132C, LEU144B, LEU144C, LEU145B, LEU161B, LEU180B, LEU181B, LEU185B, LEU185C, LEU5B, LEU5C, LEU85C, LEU91B, LEU91C, LEU96B, LEU96C, LYS13B, LYS13C, LYS182B, LYS21C, LYS2B, LYS2C, MET1B, MET1C, PHE126B, PHE126C, PHE188B, PHE188C, PRO108B, PRO108C, PRO111B, PRO111C, PRO130B, PRO130C, PRO156B, PRO156C, PRO158B, PRO186B, PRO186C, PRO93B, PRO93C, SER162B, SER4B, SER4C, SER99B, THR125B, THR133B, THR133C, THR146B, THR146C, THR23C, THR25C, THR63C, THR9B, THR9C, TYR114B, TYR114C, TYR131B, TYR131C, TYR142B, TYR142C, TYR84B, TYR84C, TYR94B, TYR94C, TYR95B, TYR95C, VAL101B, VAL101C, VAL103B, VAL103C, VAL104B, VAL104C, VAL106B, VAL106C, VAL10B, VAL10C, VAL12B, VAL12C, VAL137B, VAL137C, VAL141B, VAL141C, VAL165C, VAL187B, VAL187C, VAL24C, VAL3B, VAL3C, VAL82B, VAL82C, VAL83B, VAL83C
• B-D: ALA6B, ALA80B, ARG207D, ASP200D, ASP202D, GLN8B, GLU203D, GLU206D, GLU210D, GLU30B, GLU56B, GLY31B, GLY57B, GLY7B, LEU5B, PHE199D, SER4B
• C-D: ALA27C, ALA27D, ALA36C, ALA36D, ARG119C, ARG119D, ARG22C, ARG22D, ARG51C, ARG51D, ARG52C, ARG52D, ASP109C, ASP115D, ASP118C, ASP118D, ASP11C, ASP11D, ASP153D, ASP200D, ASP41D, ASP54C, ASP54D, GLU18C, GLU18D, GLU198C, GLU198D, GLU203D, GLU30C, GLU30D, GLU33C, GLU33D, GLU38C, GLU38D, GLU39C, GLU39D, GLU56C, GLU56D, GLY197C, GLY197D, GLY31C, GLY31D, HIS53C, HIS53D, ILE19C, ILE19D, ILE34C, ILE34D, LEU28C, LEU28D, LEU29C, LEU29D, LEU49C, LEU49D, LYS13C, LYS13D, LYS14C, LYS14D, LYS2C, LYS2D, LYS48C, LYS48D, LYS58C, LYS58D, MET168C, MET168D, MET1C, PHE199D, PRO116D, PRO20C, PRO20D, VAL117D, VAL35C, VAL35D, VAL37C, VAL37D, VAL55C, VAL55D