3FMT

crystal structure of seqa bound to dna

• Total interactions analyzed: 28
• Total true interactions: 5
• Strongest Interaction:
  • Chains: A-B
  • Int. Res.: 101
  • Norm. En. per Res.: -5.5888
• Hub Node: A(2)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-91.0766	-116.4628	-356.932	-564.4714	101	19	9	15098	7	47	55
A-F	-27.0343	-78.9398	-83.213	-189.1871	45	3	1	3676	7	27	24
B-E	-19.0995	-77.3716	-81.4648	-177.9359	45	3	1	3626	7	27	24
B-F	0.0	0.0	-13.529	-13.529	28	0	1	1267	0	6	4
E-F	-83.0698	-116.469	-354.109	-553.6478	100	22	9	15099	7	47	55

Interface residues

• A-B: ALA109B, ALA123B, ALA15A, ALA15B, ALA37A, ALA38A, ARG116B, ARG25A, ARG25B, ARG30A, ARG30B, ARG31A, ARG31B, ASP124B, ASP27A, ASP27B, ASP79A, ASP7A, ASP7B, ASP8A, ASP8B, GLN165B, GLN168B, GLN40A, GLN84A, GLU108B, GLU161B, GLU23B, GLU5A, GLU5B, GLU80A, GLU83A, GLU9A, GLU9B, GLY142A, HIS139A, HIS162B, HIS17A, HIS17B, HIS20B, ILE14A, ILE14B, ILE28A, ILE28B, ILE4A, ILE4B, LEU10A, LEU10B, LEU29A, LEU29B, LEU33A, LEU33B, LEU75A, LEU93A, LYS130B, LYS138A, LYS19B, LYS2A, LYS2B, LYS34A, LYS34B, LYS60A, LYS85A, MET1A, MET1B, MET32A, MET32B, MET92A, PHE35A, PHE35B, PRO141A, PRO144A, SER100A, SER112B, SER12A, SER12B, SER166B, SER16B, SER24A, SER24B, SER26A, SER26B, SER36A, SER39A, SER96A, THR127B, THR143A, THR18B, THR3A, THR3B, THR97A, TRP146A, TYR11A, TYR11B, TYR13A, TYR13B, TYR145A, TYR99A, VAL140A, VAL6A, VAL6B
• A-F: ALA171F, ALA71F, ALA82A, ALA82F, ARG70A, ARG70F, ARG73A, ARG73F, ARG90A, ASP79A, ASP79F, GLN84A, GLU172A, GLU172F, GLU175F, GLU74A, GLU74F, GLU80A, GLU80F, GLU83A, GLY179A, ILE65F, LEU173A, LEU173F, LEU75A, LEU75F, LEU76A, LEU76F, LEU77A, LEU77F, LYS176A, LYS176F, LYS60A, LYS66F, LYS85A, MET72A, MET72F, PRO170F, SER78A, SER78F, THR180A, TYR81A, TYR81F, VAL177A, VAL69F
• B-E: ALA171B, ALA71B, ALA82B, ALA82E, ARG70B, ARG70E, ARG73B, ARG73E, ARG90E, ASP79B, ASP79E, GLN84E, GLU172B, GLU172E, GLU175B, GLU74B, GLU74E, GLU80B, GLU80E, GLU83E, GLY179E, ILE65B, LEU173B, LEU173E, LEU75B, LEU75E, LEU76B, LEU76E, LEU77B, LEU77E, LYS176B, LYS176E, LYS60E, LYS66B, LYS85E, MET72B, MET72E, PRO170B, SER78B, SER78E, THR180E, TYR81B, TYR81E, VAL177E, VAL69B
• B-F: ALA171B, ALA171F, GLN165B, GLN165F, GLN168B, GLN168F, GLU108B, GLU108F, GLU161B, GLU161F, GLU172B, GLU172F, GLU175B, GLU175F, ILE174B, ILE174F, ILE65B, ILE65F, LYS66B, LYS66F, PHE169B, PHE169F, PRO170B, PRO170F, SER166B, SER166F, VAL69B, VAL69F
• E-F: ALA109F, ALA123F, ALA15E, ALA15F, ALA37E, ALA38E, ARG116F, ARG25E, ARG25F, ARG30E, ARG30F, ARG31E, ARG31F, ASP124F, ASP27E, ASP27F, ASP79E, ASP7E, ASP7F, ASP8E, ASP8F, GLN165F, GLN168F, GLN40E, GLN84E, GLU108F, GLU161F, GLU23F, GLU5E, GLU5F, GLU80E, GLU83E, GLU9E, GLU9F, GLY142E, HIS139E, HIS162F, HIS17E, HIS17F, HIS20F, ILE14E, ILE14F, ILE28E, ILE28F, ILE4E, ILE4F, LEU10E, LEU10F, LEU29E, LEU29F, LEU33E, LEU33F, LEU75E, LEU93E, LYS130F, LYS138E, LYS19F, LYS2E, LYS2F, LYS34E, LYS34F, LYS60E, LYS85E, MET1E, MET1F, MET32E, MET32F, MET92E, PHE35E, PHE35F, PRO141E, PRO144E, SER100E, SER112F, SER12E, SER12F, SER166F, SER16F, SER24E, SER24F, SER26E, SER26F, SER36E, SER39E, SER96E, THR127F, THR143E, THR18F, THR3E, THR3F, TRP146E, TYR11E, TYR11F, TYR13E, TYR13F, TYR145E, TYR99E, VAL140E, VAL6E, VAL6F