3FIC
t. thermophilus 70s ribosome in complex with mrna, trnas and ef- tu.gdp.kirromycin ternary complex, fitted to a 6.4 a cryo-em map. this file contains the 30s subunit and the ligands
Total interactions analyzed 351
Total true interactions 26
Strongest Interaction Chains J-N
Int. Res. 54
Norm. En. per Res. -5.4119
Hub Node B(3)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
B-E 0.0 0.0 -0.097 -0.097 7 0 0 49 0 1 2
B-H -6.4834 -35.2877 -64.0624 -105.8335 32 9 0 2762 2 17 15
B-C 0.0 0.0 -0.6137 -0.6137 6 0 0 99 0 3 5
D-E 0.0 -35.2041 -18.9538 -54.1579 39 11 0 1557 3 5 8
D-C 0.0 0.9625 -0.6849 0.2776 9 0 0 111 0 0 8
E-H -13.5617 -39.8634 -115.198 -168.6232 62 9 2 5637 3 42 42
E-C -5.3075 -28.8879 -17.7856 -51.9809 13 3 0 797 1 4 6
F-O 0.0 0.0 -1.3034 -1.3034 3 0 0 109 0 1 4
F-R -57.1269 -36.1619 -242.456 -335.7448 81 39 9 10309 1 13 22
H-L 0.0 0.0 -8.5593 -8.5593 9 0 0 448 0 0 1
H-Q 0.0 4.4646 -25.2762 -20.8116 14 3 0 1202 0 2 8
K-R -16.3528 -17.8438 -59.4963 -93.6929 29 5 2 2495 1 12 16
K-G 0.0 0.0 -44.6635 -44.6635 28 14 4 2658 0 2 7
L-Q 0.0 0.0 -37.1547 -37.1547 21 5 4 2111 0 0 8
L-Z 0.0 -7.799 -2.6523 -10.4513 4 0 0 165 0 6 4
O-Q 0.0 -1.0749 -0.5076 -1.5826 10 0 0 97 0 7 5
C-J 0.0 5.9688 -68.6634 -62.6946 53 0 2 3267 0 16 26
C-N -8.1983 15.2025 -219.093 -212.0888 78 9 3 8940 0 18 39
G-I 0.0 1.8998 -34.0556 -32.1558 36 1 4 2136 0 6 8
G-U 0.0 0.0 -0.0058 -0.0058 2 0 0 6 0 1 0
I-J 0.0 -0.8503 -26.1447 -26.995 18 9 0 1245 0 9 16
I-N 0.0 0.0 -15.0444 -15.0444 9 0 0 456 0 0 0
J-N -42.6117 -34.0154 -215.613 -292.2401 54 18 5 8602 3 16 36
M-S -11.9274 21.742 -65.6714 -55.8568 44 5 3 3526 1 11 20
M-U 0.0 0.0 -1.3844 -1.3844 11 0 0 240 0 3 9
N-S 0.0 0.0 -0.0446 -0.0446 3 0 0 22 0 0 0